Publications (co-)authored by students in the Biophysics program

2021

[1] 

Xinyao Xiang, Alexandar L Hansen, Lei Yu, Gregory Jameson, Lei Bruschweiler-Li, Chunhua Yuan, and Rafael Brüschweiler
"Observation of Sub-Microsecond Protein Methyl-Side Chain Dynamics by Nanoparticle-Assisted NMR Spin Relaxation."
J Am Chem Soc 143, 13593-13604 (2021).

[2] 

Daniel R Marzolf, Justin T Seffernick, and Steffen Lindert
"Protein Structure Prediction from NMR Hydrogen-Deuterium Exchange Data."
J Chem Theory Comput 17, 2619-2629 (2021).

[3] 

Gregory Jameson and Rafael Brüschweiler
"NMR Spin Relaxation Theory of Biomolecules Undergoing Highly Asymmetric Exchange with Large Interaction Partners."
J Chem Theory Comput 17, 2374-2382 (2021).

[4] 

Kevin J Walsh, Stavan V Shah, Ping Wei, Samuel D Oberdick, Nicole M Karn, Dana M McTigue, and Gunjan Agarwal
"Effects of fixatives on histomagnetic evaluation of iron in rodent spleen."
J Magn Magn Mater 521, 167531 (2021).

[5] 

Eric R Hantz and Steffen Lindert
"Adaptative Steered Molecular Dynamics Study of Mutagenesis Effects on Calcium Affinity in the Regulatory Domain of Cardiac Troponin C."
J Chem Inf Model 61, 3052-3057 (2021).

[6] 

Austin M Cool and Steffen Lindert
"Computational Methods Elucidate Consequences of Mutations and Post-translational Modifications on Troponin I Effective Concentration to Troponin C."
J Phys Chem B 125, 7388-7396 (2021).

[7] 

Harper Smith, Nick Pinkerton, David B Heisler, Elena Kudryashova, Aaron R Hall, Kelly R Karch, Andrew Norris, Vicki Wysocki, Marcos Sotomayor, Emil Reisler, Dimitrios Vavylonis, and Dmitri S Kudryashov
"iRounding Out/i the Understanding of ACD Toxicity with the Discovery of Cyclic Forms of Actin Oligomers."
Int J Mol Sci 22, E718 (2021).

[8] 

Stephanie S Kim, Michele J Alves, Patrick Gygli, Jose Otero, and Steffen Lindert
"Identification of Novel Cyclin A2 Binding Site and Nanomolar Inhibitors of Cyclin A2-CDK2 Complex."
Curr Comput Aided Drug Des 17, 57-68 (2021).

 

2020

[1] 

Aparna Unnikrishnan, Carlos Amero, Deepak Kumar Yadav, Kye Stachowski, Devante Potter, and Mark P Foster
"DNA binding induces a icis/i-to-itrans/i switch in Cre recombinase to enable intasome assembly."
Proc Natl Acad Sci U S A 117, 24849-24858 (2020).

[2] 

Rachael E Rayner, Jack Wellmerling, Wissam Osman, Sean Honesty, Maria Alfaro, Mark E Peeples, and Estelle Cormet-Boyaka
"In vitro 3D culture lung model from expanded primary cystic fibrosis human airway cells."
J. Cyst. Fibros. 19, S1569-19932030151-X (2020).

[3] 

Joel R Palko, Yanhui Ma, Xueliang Pan, James Liu, Catherine Reppa, Maxwell W Dixon, Keyton Clayson, Anthony Lubniewski, and Jun Liu
"Mechanical Stability of Cryopreserved Split-Thickness Tectonic Corneal Grafts."
Cornea 39, 1151-1156 (2020).

[4] 

Yanhui Ma, Sunny Kwok, Jiajun Sun, Xueliang Pan, Elias Pavlatos, Keyton Clayson, Nicholas Hazen, and Jun Liu
"IOP-induced regional displacements in the optic nerve head and correlation with peripapillary sclera thickness."
Exp. Eye Res. 200, S0014-48352030460-7 (2020).

[5] 

Stephen A Pearson, Christine Wachnowsky, and J A Cowan
"Defining the mechanism of the mitochondrial Atm1p 2Fe-2S cluster exporter."
Metallomics 12, 902-915 (2020).

[6] 

Bin Liu, Qing Lou, Heather Smith, Florencia Velez-Cortes, Wolfgang H Dillmann, Björn C Knollmann, Antonis A Armoundas, and Sándor Györke
"Conditional Up-Regulation of SERCA2a Exacerbates RyR2-Dependent Ventricular and Atrial Arrhythmias."
Int J Mol Sci 21, E2535 (2020).

[7] 

Patrick Houston, Nicolas Macro, Minhee Kang, Long Chen, Jin Yang, Lijuan Wang, Zhengrong Wu, and Dongping Zhong
"Ultrafast Dynamics of Water-Protein Coupled Motions around the Surface of Eye Crystallin."
J. Am. Chem. Soc. 142, 3997-4007 (2020).

[8] 

Keyton Clayson, Thomas Sandwisch, Yanhui Ma, Elias Pavlatos, Xueliang Pan, and Jun Liu
"Corneal Hydration Control during Ex Vivo Experimentation Using Poloxamers."
Curr. Eye Res. 45, 111-117 (2020).

[9] 

Patrick G Dougherty, Jack H Wellmerling, Amritendu Koley, Jessica K Lukowski, Amanda B Hummon, Estelle Cormet-Boyaka, and Dehua Pei
"Cyclic Peptidyl Inhibitors against CAL/CFTR Interaction for Treatment of Cystic Fibrosis."
J Med Chem 63, 15773-15784 (2020).

[10] 

Abhilasha Dehankar, Thomas Porter, Joshua A Johnson, Carlos E Castro, and Jessica O Winter
"Erratum: Compact quantum dot surface modification to enable emergent behaviors in quantum dot-DNA composites J. Chem. Phys. 151, 144706 2019."
J Chem Phys 152, 059901 (2020).

[11] 

Keyton Clayson, Elias Pavlatos, Xueliang Pan, Thomas Sandwisch, Yanhui Ma, and Jun Liu
"Ocular Pulse Elastography: Imaging Corneal Biomechanical Responses to Simulated Ocular Pulse Using Ultrasound."
Transl Vis Sci Technol 9, 5 (2020).

[12] 

Weili Zheng, Matthew Orchard, Harper Smith, Lucas A Runyan, Edward H Egelman, and Dmitri S Kudryashov
"Osteogenesis imperfecta mutations in plastin 3 lead to impaired calcium regulation of actin bundling."
Bone Res 8, 21 (2020).

[13] 

Blain Jones, Jeffrey R Tonniges, Anna Debski, Benjamin Albert, David A Yeung, Nikhit Gadde, Advitiya Mahajan, Neekun Sharma, Edward P Calomeni, Michael R Go, Chetan P Hans, and Gunjan Agarwal
"Collagen fibril abnormalities in human and mice abdominal aortic aneurysm."
Acta Biomater 110, S1742-70612030219-1 (2020).

[14] 

William C L Stewart, Komla M Gnona, Peter White, Ben Kelly, Mark Klebanoff, Irina A Buhimschi, and Leif D Nelin
"Prediction of short-term neonatal complications in preterm infants using exome-wide genetic variation and gestational age: a pilot study."
Pediatr Res 88, 653-660 (2020).

[15] 

Sunny Kwok, Keyton Clayson, Nicholas Hazen, Xueliang Pan, Yanhui Ma, Andrew J Hendershot, and Jun Liu
"Heartbeat-Induced Corneal Axial Displacement and Strain Measured by High Frequency Ultrasound Elastography in Human Volunteers."
Transl Vis Sci Technol 9, 33 (2020).

 

2019

[1] 

Maximillian Westphal, David Frankhouser, Carmine Sonzone, Peter G Shields, Pearlly Yan, and Ralf Bundschuh
"SMaSH: Sample matching using SNPs in humans."
BMC Genomics 20, 1001 (2019).

[2] 

Dengke Zhao, Jenny V Le, Michael A Darcy, Kyle Crocker, Michael G Poirier, Carlos Castro, and Ralf Bundschuh
"Quantitative Modeling of Nucleosome Unwrapping from Both Ends."
Biophys. J. 117, S0006-34951930880-X (2019).

[3] 

Gregory Jameson, Alexandar L Hansen, Dawei Li, Lei Bruschweiler-Li, and Rafael Brüschweiler
"Extreme Nonuniform Sampling for Protein NMR Dynamics Studies in Minimal Time."
J. Am. Chem. Soc. 141, 16829-16838 (2019).

[4] 

Abhilasha Dehankar, Thomas Porter, Joshua A Johnson, Carlos E Castro, and Jessica O Winter
"Compact quantum dot surface modification to enable emergent behaviors in quantum dot-DNA composites."
J Chem Phys 151, 144706 (2019).

[5] 

Jack H Wellmerling, Sheng-Wei Chang, Eunsoo Kim, Wissam H Osman, Prosper N Boyaka, Michael T Borchers, and Estelle Cormet-Boyaka
"Reduced expression of the Ion channel CFTR contributes to airspace enlargement as a consequence of aging and in response to cigarette smoke in mice."
Respir. Res. 20, 200 (2019).

[6] 

Kaivon Assani, Chandra L Shrestha, Hannah Rinehardt, Shuzhong Zhang, Frank Robledo-Avila, Jack Wellmerling, Santiago Partida-Sanchez, Estelle Cormet-Boyaka, Susan D Reynolds, Larry S Schlesinger, and Benjamin T Kopp
"AR-13 reduces antibiotic-resistant bacterial burden in cystic fibrosis phagocytes and improves cystic fibrosis transmembrane conductance regulator function."
J. Cyst. Fibros. 18, S1569-19931830869-5 (2019).

[7] 

Justin T Seffernick, He Ren, Stephanie S Kim, and Steffen Lindert
"Measuring Intrinsic Disorder and Tracking Conformational Transitions Using Rosetta ResidueDisorder."
J Phys Chem B 123, 7103-7112 (2019).

[8] 

Matthew Brehove, Elan Shatoff, Benjamin T Donovan, Caroline M Jipa, Ralf Bundschuh, and Michael G Poirier
"DNA sequence influences hexasome orientation to regulate DNA accessibility."
Nucleic Acids Res. 47, 5617-5633 (2019).

[9] 

Benjamin T Donovan, Anh Huynh, David A Ball, Heta P Patel, Michael G Poirier, Daniel R Larson, Matthew L Ferguson, and Tineke L Lenstra
"Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting."
EMBO J. 38, e100809 (2019).

[10] 

Stephanie S Kim, Melanie L Aprahamian, and Steffen Lindert
"Improving inverse docking target identification with Z-score selection."
Chem Biol Drug Des 93, 1105-1116 (2019).

[11] 

Joshua Sifford, Kevin J Walsh, Sheng Tong, Gang Bao, and Gunjan Agarwal
"Indirect magnetic force microscopy."
Nanoscale Adv 1, 2348-2355 (2019).

[12] 

Dengke Zhao, William D Baez, Kurt Fredrick, and Ralf Bundschuh
"RiboProP: a probabilistic ribosome positioning algorithm for ribosome profiling."
Bioinformatics 35, 1486-1493 (2019).

[13] 

Carol J Huseby, Ralf Bundschuh, and Jeff Kuret
"The role of annealing and fragmentation in human tau aggregation dynamics."
J. Biol. Chem. 294, 4728-4737 (2019).

[14] 

Benjamin T Donovan, Hengye Chen, Caroline Jipa, Lu Bai, and Michael G Poirier
"Dissociation rate compensation mechanism for budding yeast pioneer transcription factors."
Elife 8, e43008 (2019).

[15] 

Yanhui Ma, Elias Pavlatos, Keyton Clayson, Xueliang Pan, Sunny Kwok, Thomas Sandwisch, and Jun Liu
"Mechanical Deformation of Human Optic Nerve Head and Peripapillary Tissue in Response to Acute IOP Elevation."
Invest. Ophthalmol. Vis. Sci. 60, 913-920 (2019).

[16] 

Chao-Min Huang, Anjelica Kucinic, Jenny V Le, Carlos E Castro, and Hai-Jun Su
"Uncertainty quantification of a DNA origami mechanism using a coarse-grained model and kinematic variance analysis."
Nanoscale 11, 1647-1660 (2019).

[17] 

David A Yeung, Nirvan Shanker, Anjum Sohail, Brent A Weiss, Carolyn Wang, Jack Wellmerling, Subhadip Das, Ramesh K Ganju, Jeanette L C Miller, Andrew B Herr, Rafael Fridman, and Gunjan Agarwal
"Clustering, Spatial Distribution, and Phosphorylation of Discoidin Domain Receptors 1 and 2 in Response to Soluble Collagen I."
J. Mol. Biol. 431, 368-390 (2019).

[18] 

Carol J Huseby, Claire N Hoffman, Grace L Cooper, Jean-Christophe Cocuron, Ana P Alonso, Stefani N Thomas, Austin J Yang, and Jeff Kuret
"Quantification of Tau Protein Lysine Methylation in Aging and Alzheimers Disease."
J. Alzheimers Dis. 71, 979-991 (2019).

 

2018

[1] 

A R Blissett, B Deng, P Wei, K J Walsh, B Ollander, J Sifford, A D Sauerbeck, D W McComb, D M McTigue, and G Agarwal
"Sub-cellular In-situ Characterization of Ferritiniron in a Rodent Model of Spinal Cord Injury."
Sci Rep 8, 3567 (2018).

[2] 

Grace L Cooper, Carol J Huseby, Claire N Chandler, Jean-Christophe Cocuron, Ana P Alonso, and Jeff Kuret
"A liquid chromatography tandem mass spectroscopy approach for quantification of protein methylation stoichiometry."
Anal. Biochem. 545, 72-77 (2018).

[3] 

Pearson T Maugeri, Julia J Griese, Rui M Branca, Effie K Miller, Zachary R Smith, Jürgen Eirich, Martin Högbom, and Hannah S Shafaat
"Driving Protein Conformational Changes with Light: Photoinduced Structural Rearrangement in a Heterobimetallic Oxidase."
J. Am. Chem. Soc. 140, 1471-1480 (2018).

[4] 

Stephanie S Kim, Justin T Seffernick, and Steffen Lindert
"Accurately Predicting Disordered Regions of Proteins Using Rosetta ResidueDisorder Application."
J Phys Chem B 122, 3920-3930 (2018).

[5] 

Elias Pavlatos, Yanhui Ma, Keyton Clayson, Xueliang Pan, and Jun Liu
"Regional Deformation of the Optic Nerve Head and Peripapillary Sclera During IOP Elevation."
Invest. Ophthalmol. Vis. Sci. 59, 3779-3788 (2018).

[6] 

Sheng-Wei Chang, Jack Wellmerling, Xiaoli Zhang, Rachael E Rayner, Wissam Osman, Sara Mertz, Amal O Amer, Mark E Peeples, Prosper N Boyaka, and Estelle Cormet-Boyaka
"The psychoactive substance of cannabis Δ9-tetrahydrocannabinol THC negatively regulates CFTR in airway cells."
Biochim Biophys Acta Gen Subj 1862, 1988-1994 (2018).

 

2017

[1] 

Nathaniel A Wesley, Christine Wachnowsky, Insiya Fidai, and J A Cowan
"Understanding the molecular basis for multiple mitochondrial dysfunctions syndrome 1 MMDS1: impact of a disease-causing Gly189Arg substitution on NFU1."
FEBS J. 284, 3838-3848 (2017).

[2] 

Nathaniel A Wesley, Christine Wachnowsky, Insiya Fidai, and J A Cowan
"Analysis of NFU-1 metallocofactor binding-site substitutions-impacts on iron-sulfur cluster coordination and protein structure and function."
FEBS J. 284, 3817-3837 (2017).

[3] 

Keyton Clayson, Elias Pavlatos, Yanhui Ma, and Jun Liu
"3D Characterization of corneal deformation using ultrasound speckle tracking."
J Innov Opt Health Sci 10, 1742005 (2017).

[4] 

Meng Zhang, Lijuan Wang, and Dongping Zhong
"Photolyase: Dynamics and electron-transfer mechanisms of DNA repair."
Arch. Biochem. Biophys. 632, 158-174 (2017).

[5] 

Martin James Ross, Insiya Fidai, and James A Cowan
"Analysis of Structure-Activity Relationships Based on the Hepatitis C Virus SLIIb Internal Ribosomal Entry Sequence RNA-Targeting GGHYRFK⋅Cu Complex."
Chembiochem 18, 1743-1754 (2017).

[6] 

Maximillian S Westphal, Sara N Lim, Sultana N Nahar, Enam Chowdhury, and Anil K Pradhan
"Broadband, monochromatic and quasi-monochromatic x-ray propagation in multi-Z media for imaging and diagnostics."
Phys Med Biol 62, 6361-6378 (2017).

[7] 

Bobo Shi, Yun Kyung Shin, Ali A Hassanali, and Sherwin J Singer
"Biomolecules at the amorphous silica/water interface: Binding and fluorescence anisotropy of peptides."
Colloids Surf B Biointerfaces 157, 83-92 (2017).

[8] 

Elihu C Ihms, Ian R Kleckner, Paul Gollnick, and Mark P Foster
"Mechanistic Models Fit to Variable Temperature Calorimetric Data Provide Insights into Cooperativity."
Biophys. J. 112, 1328-1338 (2017).

[9] 

Jeffrey W Slater, Sean C Marguet, Sabrina L Cirino, Pearson T Maugeri, and Hannah S Shafaat
"Experimental and DFT Investigations Reveal the Influence of the Outer Coordination Sphere on the Vibrational Spectra of Nickel-Substituted Rubredoxin, a Model Hydrogenase Enzyme."
Inorg Chem 56, 3926-3938 (2017).

[10] 

Christine Wachnowsky, Nathaniel A Wesley, Insiya Fidai, and J A Cowan
"Understanding the Molecular Basis of Multiple Mitochondrial Dysfunctions Syndrome 1 MMDS1-Impact of a Disease-Causing Gly208Cys Substitution on Structure and Activity of NFU1 in the Fe/S Cluster Biosynthetic Pathway."
J. Mol. Biol. 429, 790-807 (2017).

[11] 

E John Tokarsky, Petra C Wallenmeyer, Kenneth K Phi, and Zucai Suo
"Significant impact of divalent metal ions on the fidelity, sugar selectivity, and drug incorporation efficiency of human PrimPol."
DNA Repair Amst. 49, 51-59 (2017).

[12] 

Meng Zhang, Lijuan Wang, and Dongping Zhong
"Photolyase: Dynamics and Mechanisms of Repair of Sun-Induced DNA Damage."
Photochem. Photobiol. 93, 78-92 (2017).

[13] 

Shane D Walton, Harshini Chakravarthy, Vikram Shettigar, Andrew J ONeil, Jalal K Siddiqui, Benjamin R Jones, Svetlana B Tikunova, and Jonathan P Davis
"Divergent Soybean Calmodulins Respond Similarly to Calcium Transients: Insight into Differential Target Regulation."
Front Plant Sci 8, 208 (2017).

[14] 

Keyton Clayson, Xueliang Pan, Elias Pavlatos, Ryan Short, Hugh Morris, Richard T Hart, and Jun Liu
"Corneoscleral stiffening increases IOP spike magnitudes during rapid microvolumetric change in the eye."
Exp. Eye Res. 165, 29-34 (2017).

[15] 

Jon delEtoile and Hojjat Adeli
"Graph Theory and Brain Connectivity in Alzheimers Disease."
Neuroscientist 23, 616-626 (2017).

[16] 

Angela R Blissett, Brooke Ollander, Brittany Penn, Dana M McTigue, and Gunjan Agarwal
"Magnetic mapping of iron in rodent spleen."
Nanomedicine 13, S1549-96341630203-9 (2017).

 

2016

[1] 

Insiya Fidai, Christine Wachnowsky, and J A Cowan
"Mapping cellular Fe-S cluster uptake and exchange reactions - divergent pathways for iron-sulfur cluster delivery to human ferredoxins."
Metallomics 8, 1283-1293 (2016).

[2] 

Christine Wachnowsky, Insiya Fidai, and James A Cowan
"Cytosolic iron-sulfur cluster transfer-a proposed kinetic pathway for reconstitution of glutaredoxin 3."
FEBS Lett. 590, 4531-4540 (2016).

[3] 

Amritraj Patra, Dustin A Politica, Arindom Chatterjee, E John Tokarsky, Zucai Suo, Ashis K Basu, Michael P Stone, and Martin Egli
"Mechanism of Error-Free Bypass of the Environmental Carcinogen N-2-Deoxyguanosin-8-yl-3-aminobenzanthrone Adduct by Human DNA Polymerase η."
Chembiochem 17, 2033-2037 (2016).

[4] 

Meng Zhang, Lijuan Wang, Shi Shu, Aziz Sancar, and Dongping Zhong
"Bifurcating electron-transfer pathways in DNA photolyases determine the repair quantum yield."
Science 354, 209-213 (2016).

[5] 

Insiya Fidai, Christine Wachnowsky, and J A Cowan
"Glutathione-complexed 2Fe-2S clusters function in Fe-S cluster storage and trafficking."
J. Biol. Inorg. Chem. 21, 887-901 (2016).

[6] 

Christine Wachnowsky, Insiya Fidai, and J A Cowan
"Iron-sulfur cluster exchange reactions mediated by the human Nfu protein."
J. Biol. Inorg. Chem. 21, 825-36 (2016).

[7] 

E John Tokarsky, Varun V Gadkari, Walter J Zahurancik, Chanchal K Malik, Ashis K Basu, and Zucai Suo
"Pre-steady-state kinetic investigation of bypass of a bulky guanine lesion by human Y-family DNA polymerases."
DNA Repair Amst. 46, 20-28 (2016).

[8] 

Joshua P Ferguson, Nathan M Willy, Spencer P Heidotting, Scott D Huber, Matthew J Webber, and Comert Kural
"Deciphering dynamics of clathrin-mediated endocytosis in a living organism."
J. Cell Biol. 214, 347-58 (2016).

[9] 

Jenny V Le, Yi Luo, Michael A Darcy, Christopher R Lucas, Michelle F Goodwin, Michael G Poirier, and Carlos E Castro
"Probing Nucleosome Stability with a DNA Origami Nanocaliper."
ACS Nano 10, 7073-84 (2016).

[10] 

Jonathan P Davis, Vikram Shettigar, Svetlana B Tikunova, Sean C Little, Bin Liu, Jalal K Siddiqui, Paul M L Janssen, Mark T Ziolo, and Shane D Walton
"Designing proteins to combat disease: Cardiac troponin C as an example."
Arch. Biochem. Biophys. 601, 4-10 (2016).

[11] 

Jeffrey R Tonniges, Benjamin Albert, Edward P Calomeni, Shuvro Roy, Joan Lee, Xiaokui Mo, Susan E Cole, and Gunjan Agarwal
"Collagen Fibril Ultrastructure in Mice Lacking Discoidin Domain Receptor 1."
Microsc. Microanal. 22, 599-611 (2016).

[12] 

Michelle L Asp, Frances V Sjaastad, Jalal K Siddiqui, Jonathan P Davis, and Joseph M Metzger
"Effects of Modified Parvalbumin EF-Hand Motifs on Cardiac Myocyte Contractile Function."
Biophys. J. 110, 2094-105 (2016).

[13] 

Bobo Shi, Mithila V Agnihotri, Si-Han Chen, Richie Black, and Sherwin J Singer
"Polarization charge: Theory and applications to aqueous interfaces."
J Chem Phys 144, 164702 (2016).

[14] 

Benjamin T Kopp, Juan Antonio Ortega-García, S Christy Sadreameli, Jack Wellmerling, Estelle Cormet-Boyaka, Rohan Thompson, Sharon McGrath-Morrow, and Judith A Groner
"The Impact of Secondhand Smoke Exposure on Children with Cystic Fibrosis: A Review."
Int J Environ Res Public Health 13, E1003 (2016).

[15] 

Carol J Huseby and Jeff Kuret
"Analyzing Tau Aggregation with Electron Microscopy."
Methods Mol. Biol. 1345, 101-12 (2016).

[16] 

Patrick D Halley, Christopher R Lucas, Emily M McWilliams, Matthew J Webber, Randy A Patton, Comert Kural, David M Lucas, John C Byrd, and Carlos E Castro
"DNA Origami: Daunorubicin-Loaded DNA Origami Nanostructures Circumvent Drug-Resistance Mechanisms in a Leukemia Model Small 3/2016."
Small 12, 307 (2016).

[17] 

Patrick D Halley, Christopher R Lucas, Emily M McWilliams, Matthew J Webber, Randy A Patton, Comert Kural, David M Lucas, John C Byrd, and Carlos E Castro
"Daunorubicin-Loaded DNA Origami Nanostructures Circumvent Drug-Resistance Mechanisms in a Leukemia Model."
Small 12, 308-20 (2016).

[18] 

Nathan D Jones, Miguel A Lopez, Jeungphill Hanne, Mitchell B Peake, Jong-Bong Lee, Richard Fishel, and Kristine E Yoder
"Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integration."
Nat Commun 7, 11409 (2016).

[19] 

Kruthika Sundaram, Mohd Akhlakur Rahman, Srabani Mitra, Daren L Knoell, Shireen A Woodiga, Samantha J King, and Mark D Wewers
"IκBζ Regulates Human Monocyte Pro-Inflammatory Responses Induced by Streptococcus pneumoniae."
PLoS ONE 11, e0161931 (2016).

[20] 

M D Gibson, M Brehove, Y Luo, J North, and M G Poirier
"Methods for Investigating DNA Accessibility with Single Nucleosomes."
Meth. Enzymol. 581, 379-415 (2016).

[21] 

Hussam E Salhi, Nathan C Hassel, Jalal K Siddiqui, Elizabeth A Brundage, Mark T Ziolo, Paul M L Janssen, Jonathan P Davis, and Brandon J Biesiadecki
"Myofilament Calcium Sensitivity: Mechanistic Insight into TnI Ser-23/24 and Ser-150 Phosphorylation Integration."
Front Physiol 7, 567 (2016).

[22] 

Jalal K Siddiqui, Svetlana B Tikunova, Shane D Walton, Bin Liu, Meredith Meyer, Pieter P de Tombe, Nathan Neilson, Peter M Kekenes-Huskey, Hussam E Salhi, Paul M L Janssen, Brandon J Biesiadecki, and Jonathan P Davis
"Myofilament Calcium Sensitivity: Consequences of the Effective Concentration of Troponin I."
Front Physiol 7, 632 (2016).

 

2015

[1] 

Jingwei Li, Stephen A Pearson, Kevin D Fenk, and J A Cowan
"Glutathione-coordinated 2Fe-2S cluster is stabilized by intramolecular salt bridges."
J. Biol. Inorg. Chem. 20, 1221-7 (2015).

[2] 

Mircea Anghelescu, Jeffrey R Tonniges, Ed Calomeni, Patricia E Shamhart, Gunjan Agarwal, Keith J Gooch, and Aaron J Trask
"Vascular Mechanics in Decellularized Aortas and Coronary Resistance Microvessels in Type 2 Diabetic db/db Mice."
Ann Biomed Eng 43, 2760-70 (2015).

[3] 

Matthew Brehove, Tao Wang, Justin North, Yi Luo, Sarah J Dreher, John C Shimko, Jennifer J Ottesen, Karolin Luger, and Michael G Poirier
"Histone Core Phosphorylation Regulates DNA Accessibility."
J. Biol. Chem. 290, 22612-21 (2015).

[4] 

Kruthika Sundaram, Srabani Mitra, Mikhail A Gavrilin, and Mark D Wewers
"House Dust Mite Allergens and the Induction of Monocyte Interleukin 1β Production That Triggers an IκBζ-Dependent Granulocyte Macrophage Colony-Stimulating Factor Release from Human Lung Epithelial Cells."
Am. J. Respir. Cell Mol. Biol. 53, 400-11 (2015).

[5] 

Bobo Shi, Yun Kyung Shin, Ali A Hassanali, and Sherwin J Singer
"DNA Binding to the Silica Surface."
J Phys Chem B 119, 11030-40 (2015).

[6] 

Jie Gao, Xu Wang, Meng Zhang, Mingdi Bian, Weixian Deng, Zecheng Zuo, Zhenming Yang, Dongping Zhong, and Chentao Lin
"Trp triad-dependent rapid photoreduction is not required for the function of Arabidopsis CRY1."
Proc. Natl. Acad. Sci. U.S.A. 112, 9135-40 (2015).

[7] 

Elihu C Ihms and Mark P Foster
"MESMER: minimal ensemble solutions to multiple experimental restraints."
Bioinformatics 31, 1951-8 (2015).

[8] 

Comert Kural, Ahmet Ata Akatay, Raphaël Gaudin, Bi-Chang Chen, Wesley R Legant, Eric Betzig, and Tom Kirchhausen
"Asymmetric formation of coated pits on dorsal and ventral surfaces at the leading edges of motile cells and on protrusions of immobile cells."
Mol. Biol. Cell 26, 2044-53 (2015).

[9] 

Rajan Vyas, Andrew J Reed, E John Tokarsky, and Zucai Suo
"Viewing Human DNA Polymerase β Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography."
J. Am. Chem. Soc. 137, 5225-30 (2015).

[10] 

Carlos E Castro, Hai-Jun Su, Alexander E Marras, Lifeng Zhou, and Joshua Johnson
"Mechanical design of DNA nanostructures."
Nanoscale 7, 5913-21 (2015).

[11] 

Sara N Lim, Anil K Pradhan, Rolf F Barth, Sultana N Nahar, Robin J Nakkula, Weilian Yang, Alycia M Palmer, Claudia Turro, Michael Weldon, Erica Hlavin Bell, and Xiaokui Mo
"Tumoricidal activity of low-energy 160-KV versus 6-MV X-rays against platinum-sensitized F98 glioma cells."
J. Radiat. Res. 56, 77-89 (2015).

[12] 

Kaylan M Haizlip, Nima Milani-Nejad, Lucia Brunello, Kenneth D Varian, Jessica L Slabaugh, Shane D Walton, Sandor Gyorke, Jonathan P Davis, Brandon J Biesiadecki, and Paul M L Janssen
"Dissociation of Calcium Transients and Force Development following a Change in Stimulation Frequency in Isolated Rabbit Myocardium."
Biomed Res Int 2015, 468548 (2015).

[13] 

Morgan Bernier, Yi Luo, Kingsley C Nwokelo, Michelle Goodwin, Sarah J Dreher, Pei Zhang, Mark R Parthun, Yvonne Fondufe-Mittendorf, Jennifer J Ottesen, and Michael G Poirier
"Linker histone H1 and H3K56 acetylation are antagonistic regulators of nucleosome dynamics."
Nat Commun 6, 10152 (2015).

[14] 

Dipu Mohan Kumar, Mingqun Lin, Qingming Xiong, Mathew James Webber, Comert Kural, and Yasuko Rikihisa
"EtpE Binding to DNase X Induces Ehrlichial Entry via CD147 and hnRNP-K Recruitment, Followed by Mobilization of N-WASP and Actin."
MBio 6, e01541-15 (2015).

[15] 

Sarah Hulbert and Hojjat Adeli
"Spotting psychopaths using technology."
Rev Neurosci 26, 721-32 (2015).

 

2014

[1] 

Insiya Fidai, Lalintip Hocharoen, Seth Bradford, Christine Wachnowsky, and J A Cowan
"Inactivation of sortase A mediated by metal ATCUN complexes."
J. Biol. Inorg. Chem. 19, 1327-39 (2014).

[2] 

Yi Luo, Justin A North, and Michael G Poirier
"Single molecule fluorescence methodologies for investigating transcription factor binding kinetics to nucleosomes and DNA."
Methods 70, 108-18 (2014).

[3] 

Cai Chen and Ralf Bundschuh
"Quantitative models for accelerated protein dissociation from nucleosomal DNA."
Nucleic Acids Res. 42, 9753-60 (2014).

[4] 

Hussam E Salhi, Shane D Walton, Nathan C Hassel, Elizabeth A Brundage, Pieter P de Tombe, Paul M L Janssen, Jonathan P Davis, and Brandon J Biesiadecki
"Cardiac troponin I tyrosine 26 phosphorylation decreases myofilament Ca2 sensitivity and accelerates deactivation."
J. Mol. Cell. Cardiol. 76, 257-264 (2014).

[5] 

Xiakun Chu, Fei Liu, Brian A Maxwell, Yong Wang, Zucai Suo, Haijun Wang, Wei Han, and Jin Wang
"Dynamic Conformational Change Regulates the Protein-DNA Recognition: An Investigation on Binding of a Y-Family Polymerase to Its Target DNA."
PLoS Comput. Biol. 10, e1003804 (2014).

[6] 

Varun V Gadkari, E John Tokarsky, Chanchal K Malik, Ashis K Basu, and Zucai Suo
"Mechanistic investigation of the bypass of a bulky aromatic DNA adduct catalyzed by a Y-family DNA polymerase."
DNA Repair Amst. 21, 65-77 (2014).

[7] 

Kristen E Funk, Stefani N Thomas, Kelsey N Schafer, Grace L Cooper, Zhongping Liao, David J Clark, Austin J Yang, and Jeff Kuret
"Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity."
Biochem. J. 462, 77-88 (2014).

[8] 

Cuiling Xu, Brian A Maxwell, and Zucai Suo
"Conformational Dynamics of Thermus aquaticus DNA Polymerase I during Catalysis."
J. Mol. Biol. 426, 2901-17 (2014).

[9] 

Mithila V Agnihotri, Si-Han Chen, Corey Beck, and Sherwin J Singer
"Displacements, mean-squared displacements, and codisplacements for the calculation of nonequilibrium properties."
J Phys Chem B 118, 8170-8 (2014).

[10] 

Mu Zhang, Shengyan Xiang, Heui-Yun Joo, Lei Wang, Kendra A Williams, Wei Liu, Chen Hu, Dan Tong, Joshua Haakenson, Chuangui Wang, Shengping Zhang, Ryan E Pavlovicz, Amanda Jones, Kristina H Schmidt, Jinfu Tang, Huiqin Dong, Bin Shan, Bin Fang, Rangasudhagar Radhakrishnan, Peter M Glazer, Patrick Matthias, John Koomen, Edward Seto, Gerold Bepler, Santo V Nicosia, Jiandong Chen, Chenglong Li, Liya Gu, Guo-Min Li, Wenlong Bai, Hengbin Wang, and Xiaohong Zhang
"HDAC6 Deacetylates and Ubiquitinates MSH2 to Maintain Proper Levels of MutSα."
Mol. Cell 55, 31-46 (2014).

[11] 

Huyen T Nguyen, Kamal S Pohar, Guang Jia, Zarine K Shah, Amir Mortazavi, Debra L Zynger, Lai Wei, Daniel Clark, Xiangyu Yang, and Michael V Knopp
"Improving Bladder Cancer Imaging Using 3-T Functional Dynamic Contrast-Enhanced Magnetic Resonance Imaging."
Invest Radiol 49, 390-395 (2014).

[12] 

Seth S Bradford, Martin James Ross, Insiya Fidai, and James A Cowan
"Insight into the Recognition, Binding, and Reactivity of Catalytic Metallodrugs Targeting Stem Loop IIb of Hepatitis C IRES RNA."
ChemMedChem 9, 1275-85 (2014).

[13] 

Brian A Maxwell and Zucai Suo
"Recent insight into the kinetic mechanisms and conformational dynamics of y-family DNA polymerases."
Biochemistry 53, 2804-14 (2014).

[14] 

Brian A Maxwell, Cuiling Xu, and Zucai Suo
"Conformational Dynamics of a Y-Family DNA Polymerase during Substrate Binding and Catalysis As Revealed by Interdomain Förster Resonance Energy Transfer."
Biochemistry 53, 1768-78 (2014).

[15] 

Benjamin R Nixon, Shane D Walton, Bo Zhang, Elizabeth A Brundage, Sean C Little, Mark T Ziolo, Jonathan P Davis, and Brandon J Biesiadecki
"Combined troponin I Ser-150 and Ser-23/24 phosphorylation sustains thin filament Ca2 sensitivity and accelerates deactivation in an acidic environment."
J. Mol. Cell. Cardiol. 72, 177-185 (2014).

[16] 

Elihu C Ihms, Mowei Zhou, Yun Zhang, Ian R Kleckner, Craig A McElroy, Vicki H Wysocki, Paul Gollnick, and Mark P Foster
"Gene regulation by substoichiometric heterocomplex formation of undecameric TRAP and trimeric anti-TRAP."
Proc. Natl. Acad. Sci. U.S.A. 111, 3442-7 (2014).

[17] 

Yi Luo, Justin A North, Sean D Rose, and Michael G Poirier
"Nucleosomes accelerate transcription factor dissociation."
Nucleic Acids Res. 42, 3017-27 (2014).

[18] 

Huameng Li, Hui Xiao, Li Lin, David Jou, Vandana Kumari, Jiayuh Lin, and Chenglong Li
"Drug design targeting protein-protein interactions PPIs using multiple ligand simultaneous docking MLSD and drug repositioning: discovery of raloxifene and bazedoxifene as novel inhibitors of IL-6/GP130 interface."
J. Med. Chem. 57, 632-41 (2014).

[19] 

Wenbo Wei, Guang Jia, David Flanigan, Jinyuan Zhou, and Michael V Knopp
"Chemical exchange saturation transfer MR imaging of articular cartilage glycosaminoglycans at 3T: Accuracy of B0 Field Inhomogeneity corrections with gradient echo method."
Magn Reson Imaging 32, 41-7 (2014).

[20] 

Hsiang-Ting Ho, Bin Liu, Jedidiah S Snyder, Qing Lou, Elizabeth A Brundage, Florencia Velez-Cortes, Honglan Wang, Mark T Ziolo, Mark E Anderson, Chandan K Sen, Xander H T Wehrens, Vadim V Fedorov, Brandon J Biesiadecki, Thomas J Hund, and Sándor Györke
"Ryanodine receptor phosphorylation by oxidized CaMKII contributes to the cardiotoxic effects of cardiac glycosides."
Cardiovasc. Res. 101, 165-74 (2014).

[21] 

Jerry Curran, Lifei Tang, Steve R Roof, Sathya Velmurugan, Ashley Millard, Stephen Shonts, Honglan Wang, Demetrio Santiago, Usama Ahmad, Matthew Perryman, Donald M Bers, Peter J Mohler, Mark T Ziolo, and Thomas R Shannon
"Nitric Oxide-Dependent Activation of CaMKII Increases Diastolic Sarcoplasmic Reticulum Calcium Release in Cardiac Myocytes in Response to Adrenergic Stimulation."
PLoS ONE 9, e87495 (2014).

[22] 

Mohd Akhlakur Rahman, Kruthika Sundaram, Srabani Mitra, Mikhail A Gavrilin, and Mark D Wewers
"Receptor interacting protein-2 plays a critical role in human lung epithelial cells survival in response to fas-induced cell-death."
PLoS ONE 9, e92731 (2014).

[23] 

William C Ray, R Wolfgang Rumpf, Brandon Sullivan, Nicholas Callahan, Thomas Magliery, Raghu Machiraju, Bang Wong, Martin Krzywinski, and Christopher W Bartlett
"Understanding the sequence requirements of protein families: insights from the BioVis 2013 contests."
BMC Proc 8, S1 (2014).

[24] 

Katryna Cisek, Grace L Cooper, Carol J Huseby, and Jeff Kuret
"Structure and mechanism of action of tau aggregation inhibitors."
Curr Alzheimer Res 11, 918-27 (2014).

[25] 

Karl W Kroll, Nima E Mokaram, Alexander R Pelletier, David E Frankhouser, Maximillian S Westphal, Paige A Stump, Cameron L Stump, Ralf Bundschuh, James S Blachly, and Pearlly Yan
"Quality Control for RNA-Seq QuaCRS: An Integrated Quality Control Pipeline."
Cancer Inform 13, 7-14 (2014).

 

2013

[1] 

Ian R Kleckner, Craig A McElroy, Petr Kuzmic, Paul Gollnick, and Mark P Foster
"Homotropic cooperativity from the activation pathway of the allosteric ligand-responsive regulatory trp RNA-binding attenuation protein."
Biochemistry 52, 8855-65 (2013).

[2] 

Kelsey N Schafer, Katryna Cisek, Carol J Huseby, Edward Chang, and Jeff Kuret
"Structural determinants of tau aggregation inhibitor potency."
J. Biol. Chem. 288, 32599-611 (2013).

[3] 

David Yeung, David Chmielewski, Cosmin Mihai, and Gunjan Agarwal
"Oligomerization of DDR1 ECD affects receptor-ligand binding."
J Struct Biol 183, S1047-84771300165-2 (2013).

[4] 

Zheyun Liu, Meng Zhang, Xunmin Guo, Chuang Tan, Jiang Li, Lijuan Wang, Aziz Sancar, and Dongping Zhong
"Dynamic determination of the functional state in photolyase and the implication for cryptochrome."
Proc. Natl. Acad. Sci. U.S.A. 110, 12972-7 (2013).

[5] 

Bitna Yi, Sihui Long, Tatiana F González-Cestari, Brandon J Henderson, Ryan E Pavlovicz, Karl Werbovetz, Chenglong Li, and Dennis B McKay
"Discovery of benzamide analogs as negative allosteric modulators of human neuronal nicotinic receptors: pharmacophore modeling and structure-activity relationship studies."
Bioorg. Med. Chem. 21, 4730-43 (2013).

[6] 

Yu Kay Law, Robert A Forties, Xin Liu, Michael G Poirier, and Bern Kohler
"Sequence-dependent thymine dimer formation and photoreversal rates in double-stranded DNA."
Photochem. Photobiol. Sci. 12, 1431-9 (2013).

[7] 

Lucia Brunello, Jessica L Slabaugh, Przemyslaw B Radwanski, Hsiang-Ting Ho, Andriy E Belevych, Qing Lou, Haiyan Chen, Carlo Napolitano, Francesco Lodola, Silvia G Priori, Vadim V Fedorov, Pompeo Volpe, Michael Fill, Paul M L Janssen, and Sándor Györke
"Decreased RyR2 refractoriness determines myocardial synchronization of aberrant Ca2 release in a genetic model of arrhythmia."
Proc. Natl. Acad. Sci. U.S.A. 110, 10312-7 (2013).

[8] 

Sai Krishna C Korada, Trevor D Johns, Christopher E Smith, Nathan D Jones, Kimberly A McCabe, and Charles E Bell
"Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion."
Nucleic Acids Res. 41, 5887-97 (2013).

[9] 

Brian A Maxwell and Zucai Suo
"Single-molecule investigation of substrate binding kinetics and protein conformational dynamics of a B-family replicative DNA polymerase."
J. Biol. Chem. 288, 11590-600 (2013).

[10] 

David J Taggart, Terry L Camerlengo, Jason K Harrison, Shanen M Sherrer, Ajay K Kshetry, John-Stephen Taylor, Kun Huang, and Zucai Suo
"A high-throughput and quantitative method to assess the mutagenic potential of translesion DNA synthesis."
Nucleic Acids Res. 41, e96 (2013).

[11] 

Hsueh-Liang Fu, Rajeshwari R Valiathan, Richard Arkwright, Anjum Sohail, Cosmin Mihai, Malika Kumarasiri, Kiran V Mahasenan, Shahriar Mobashery, Paul Huang, Gunjan Agarwal, and Rafael Fridman
"Discoidin domain receptors: unique receptor tyrosine kinases in collagen-mediated signaling."
J Biol Chem 288, 7430-7 (2013).

[12] 

Yazhini Ravi, Karuppaiyah Selvendiran, Shan K Naidu, Sarath Meduru, Lucas A Citro, Balázs Bognár, Mahmood Khan, Tamás Kálai, Kálmán Hideg, Periannan Kuppusamy, and Chittoor B Sai-Sudhakar
"Pulmonary hypertension secondary to left-heart failure involves peroxynitrite-induced downregulation of PTEN in the lung."
Hypertension 61, 593-601 (2013).

[13] 

Andrew B Campbell, Michael V Knopp, Gregory P Kolovich, Wendo Wei, Guang Jia, Robert A Siston, and David C Flanigan
"Preoperative MRI underestimates articular cartilage defect size compared with findings at arthroscopic knee surgery."
Am J Sports Med 41, 590-5 (2013).

[14] 

Patrick C Still, Bitna Yi, Tatiana F González-Cestari, Li Pan, Ryan E Pavlovicz, Hee-Byung Chai, Tran Ngoc Ninh, Chenglong Li, Djaja Djendoel Soejarto, Dennis B McKay, and A Douglas Kinghorn
"Alkaloids from Microcos paniculata with cytotoxic and nicotinic receptor antagonistic activities."
J. Nat. Prod. 76, 243-9 (2013).

[15] 

Ming-Jie Liu, Shengying Bao, Marina Gálvez-Peralta, Charlie J Pyle, Andrew C Rudawsky, Ryan E Pavlovicz, David W Killilea, Chenglong Li, Daniel W Nebert, Mark D Wewers, and Daren L Knoell
"ZIP8 regulates host defense through zinc-mediated inhibition of NF-κB."
Cell Rep 3, 386-400 (2013).

[16] 

Sverre E Aune, Steve T Yeh, Periannan Kuppusamy, M Lakshmi Kuppusamy, Mahmood Khan, and Mark G Angelos
"Sivelestat attenuates myocardial reperfusion injury during brief low flow postischemic infusion."
Oxid Med Cell Longev 2013, 279847 (2013).

[17] 

Erin N Frey, Ryan E Pavlovicz, Clem John Wegman, Chenglong Li, and Candice C Askwith
"Conformational Changes in the Lower Palm Domain of ASIC1a Contribute to Desensitization and RFamide Modulation."
PLoS ONE 8, e71733 (2013).

[18] 

Carlos A A Torres, Kenneth D Varian, Cynthia H Canan, Jonathan P Davis, and Paul M L Janssen
"The positive inotropic effect of pyruvate involves an increase in myofilament calcium sensitivity."
PLoS ONE 8, e63608 (2013).

[19] 

Steve R Roof, Lifei Tang, Joseph E Ostler, Muthu Periasamy, Sandor Györke, George E Billman, and Mark T Ziolo
"Neuronal nitric oxide synthase is indispensable for the cardiac adaptive effects of exercise."
Basic Res. Cardiol. 108, 332 (2013).

[20] 

Steve T Yeh, Sverre E Aune, Traci A Wilgus, Allison E Parent, and Mark G Angelos
"Hyperoxemic reperfusion after prolonged cardiac arrest in a rat cardiopulmonary bypass resuscitation model."
Resuscitation 84, 114-20 (2013).

[21] 

Andriy E Belevych, Hsiang-Ting Ho, Radmila Terentyeva, Ingrid M Bonilla, Dmitry Terentyev, Cynthia A Carnes, Sandor Gyorke, and George E Billman
"Dietary omega-3 Fatty acids promote arrhythmogenic remodeling of cellular ca2 handling in a postinfarction model of sudden cardiac death."
PLoS ONE 8, e78414 (2013).

[22] 

Sarah Hulbert and Hojjat Adeli
"EEG/MEG- and imaging-based diagnosis of Alzheimers disease."
Rev Neurosci 24, 563-76 (2013).

 

2012

[1] 

Ingrid M Bonilla, Andriy E Belevych, Arun Sridhar, Yoshinori Nishijima, Hsiang-Ting Ho, Quanhua He, Monica Kukielka, Dmitry Terentyev, Radmila Terentyeva, Bin Liu, Victor P Long, Sandor Györke, Cynthia A Carnes, and George E Billman
"Endurance exercise training normalizes repolarization and calcium-handling abnormalities, preventing ventricular fibrillation in a model of sudden cardiac death."
J. Appl. Physiol. 113, 1772-83 (2012).

[2] 

Leilei Zhang, Jiwei Huang, Ting Si, and Ronald X Xu
"Coaxial electrospray of microparticles and nanoparticles for biomedical applications."
Expert Rev Med Devices 9, 595-612 (2012).

[3] 

Olha M Koval, Jedidiah S Snyder, Roseanne M Wolf, Ryan E Pavlovicz, Patric Glynn, Jerry Curran, Nicholas D Leymaster, Wen Dun, Patrick J Wright, Natalia Cardona, Lan Qian, Colleen C Mitchell, Penelope A Boyden, Philip F Binkley, Chenglong Li, Mark E Anderson, Peter J Mohler, and Thomas J Hund
"Ca2/calmodulin-dependent protein kinase II-based regulation of voltage-gated Na channel in cardiac disease."
Circulation 126, 2084-94 (2012).

[4] 

Brandon J Henderson, Tatiana F González-Cestari, Bitna Yi, Ryan E Pavlovicz, R Thomas Boyd, Chenglong Li, Stephen C Bergmeier, and Dennis B McKay
"Defining the Putative Inhibitory Site for a Selective Negative Allosteric Modulator of Human α4β2 Neuronal Nicotinic Receptors."
ACS Chem Neurosci 3, 682-92 (2012).

[5] 

Ya-Ting Kao, Xunmin Guo, Yi Yang, Zheyun Liu, Ali Hassanali, Qin-Hua Song, Lijuan Wang, and Dongping Zhong
"Ultrafast dynamics of nonequilibrium electron transfer in photoinduced redox cycle: solvent mediation and conformation flexibility."
J Phys Chem B 116, 9130-40 (2012).

[6] 

Shanen M Sherrer, Brian A Maxwell, Lindsey R Pack, Kevin A Fiala, Jason D Fowler, Jun Zhang, and Zucai Suo
"Identification of an unfolding intermediate for a DNA lesion bypass polymerase."
Chem. Res. Toxicol. 25, 1531-40 (2012).

[7] 

Yashaswini Kannan, Kruthika Sundaram, Chandrakala Aluganti Narasimhulu, Sampath Parthasarathy, and Mark D Wewers
"Oxidatively modified low density lipoprotein LDL inhibits TLR2 and TLR4 cytokine responses in human monocytes but not in macrophages."
J. Biol. Chem. 287, 23479-88 (2012).

[8] 

Brian A Maxwell and Zucai Suo
"Kinetic basis for the differing response to an oxidative lesion by a replicative and a lesion bypass DNA polymerase from Sulfolobus solfataricus."
Biochemistry 51, 3485-96 (2012).

[9] 

Kelsey N Schafer, Sohee Kim, Anastasios Matzavinos, and Jeff Kuret
"Selectivity requirements for diagnostic imaging of neurofibrillary lesions in Alzheimers disease: a simulation study."
Neuroimage 60, 1724-33 (2012).

[10] 

Brian A Maxwell, Cuiling Xu, and Zucai Suo
"DNA lesion alters global conformational dynamics of Y-family DNA polymerase during catalysis."
J. Biol. Chem. 287, 13040-7 (2012).

[11] 

Ravindra Amunugama, Yujiong He, Smaranda Willcox, Robert A Forties, Kang-Sup Shim, Ralf Bundschuh, Yu Luo, Jack Griffith, and Richard Fishel
"RAD51 protein ATP cap regulates nucleoprotein filament stability."
J. Biol. Chem. 287, 8724-36 (2012).

[12] 

Andriy E Belevych, Dmitry Terentyev, Radmila Terentyeva, Hsiang-Ting Ho, Inna Gyorke, Ingrid M Bonilla, Cynthia A Carnes, George E Billman, and Sandor Györke
"Shortened Ca2 signaling refractoriness underlies cellular arrhythmogenesis in a postinfarction model of sudden cardiac death."
Circ. Res. 110, 569-77 (2012).

[13] 

Katryna Cisek and Jeff Kuret
"QSAR studies for prediction of cross-β sheet aggregate binding affinity and selectivity."
Bioorg. Med. Chem. 20, 1434-41 (2012).

[14] 

Ya-Ting Kao, Qin-Hua Song, Chaitanya Saxena, Lijuan Wang, and Dongping Zhong
"Dynamics and mechanism of DNA repair in a biomimetic system: flavin-thymine dimer adduct."
J. Am. Chem. Soc. 134, 1501-3 (2012).

[15] 

Ian R Kleckner, Paul Gollnick, and Mark P Foster
"Mechanisms of allosteric gene regulation by NMR quantification of microsecond-millisecond protein dynamics."
J. Mol. Biol. 415, 372-81 (2012).

[16] 

Cai Chen, David Frankhouser, and Ralf Bundschuh
"Comparison of insertional RNA editing in Myxomycetes."
PLoS Comput. Biol. 8, e1002400 (2012).

[17] 

Terry Camerlengo, Hatice Gulcin Ozer, Raghuram Onti-Srinivasan, Pearlly Yan, Tim Huang, Jeffrey Parvin, and Kun Huang
"From sequencer to supercomputer: an automatic pipeline for managing and processing next generation sequencing data."
AMIA Summits Transl Sci Proc 2012, 1-10 (2012).

[18] 

Mahmood Khan, Sarath Meduru, Rajan Gogna, Esha Madan, Lucas Citro, Muthulakshmi L Kuppusamy, Muzzammil Sayyid, Mahmoud Mostafa, Robert L Hamlin, and Periannan Kuppusamy
"Oxygen cycling in conjunction with stem cell transplantation induces NOS3 expression leading to attenuation of fibrosis and improved cardiac function."
Cardiovasc. Res. 93, 89-99 (2012).

[19] 

Ingrid M Bonilla, Arun Sridhar, Sandor Györke, Arturo J Cardounel, and Cynthia A Carnes
"Nitric oxide synthases and atrial fibrillation."
Front Physiol 3, 105 (2012).

[20] 

Katryna Cisek, Jordan R Jensen, Nicolette S Honson, Kelsey N Schafer, Grace L Cooper, and Jeff Kuret
"Ligand electronic properties modulate tau filament binding site density."
Biophys. Chem. 170, 25-33 (2012).

[21] 

Christopher J Traynham, Steve R Roof, Honglan Wang, Robert A Prosak, Lifei Tang, Serge Viatchenko-Karpinski, Hsiang-Ting Ho, Ira O Racoma, Dominic J Catalano, Xin Huang, Yongbin Han, Shang-U Kim, Sandor Gyorke, George E Billman, Frederick A Villamena, and Mark T Ziolo
"Diesterified nitrone rescues nitroso-redox levels and increases myocyte contraction via increased SR Ca2 handling."
PLoS ONE 7, e52005 (2012).

[22] 

Cai Chen and Ralf Bundschuh
"Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome."
BMC Genomics 13, 616 (2012).

[23] 

Bin Liu, Svetlana B Tikunova, Kristopher P Kline, Jalal K Siddiqui, and Jonathan P Davis
"Disease-related cardiac troponins alter thin filament Ca2 association and dissociation rates."
PLoS ONE 7, e38259 (2012).

[24] 

Ian R Kleckner and Mark P Foster
"GUARDD: user-friendly MATLAB software for rigorous analysis of CPMG RD NMR data."
J. Biomol. NMR 52, 11-22 (2012).

 

2011

[1] 

Brandon J Henderson, Daniel J Carper, Tatiana F González-Cestari, Bitna Yi, Kiran Mahasenan, Ryan E Pavlovicz, Martin L Dalefield, Robert S Coleman, Chenglong Li, and Dennis B McKay
"Structure-activity relationship studies of sulfonylpiperazine analogues as novel negative allosteric modulators of human neuronal nicotinic receptors."
J. Med. Chem. 54, 8681-92 (2011).

[2] 

Mark G Angelos, Steve T Yeh, and Sverre E Aune
"Post-cardiac arrest hyperoxia and mitochondrial function."
Resuscitation 82, S48-51 (2011).

[3] 

Kiran V Mahasenan, Ryan E Pavlovicz, Brandon J Henderson, Tatiana F González-Cestari, Bitna Yi, Dennis B McKay, and Chenglong Li
"Discovery of Novel α4β2 Neuronal Nicotinic Receptor Modulators through Structure-Based Virtual Screening."
ACS Med Chem Lett 2, 855-60 (2011).

[4] 

Hsiang-Ting Ho, Sarah C W Stevens, Radmila Terentyeva, Cynthia A Carnes, Dmitry Terentyev, and Sandor Györke
"Arrhythmogenic adverse effects of cardiac glycosides are mediated by redox modification of ryanodine receptors."
J. Physiol. Lond. 589, 4697-708 (2011).

[5] 

Mohammad T Elnakish, Mohamed M Awad, Mohamed D H Hassona, Mazin A Alhaj, Aditi Kulkarni, Lucas A Citro, Muzzammil Sayyid, Zeinb A Abouelnaga, Osama El-Sayed, Periannan Kuppusamy, Leni Moldovan, Mahmood Khan, and Hamdy H Hassanain
"Cardiac remodeling caused by transgenic overexpression of a corn Rac gene."
Am. J. Physiol. Heart Circ. Physiol. 301, H868-80 (2011).

[6] 

Jordan R Jensen, Katryna Cisek, Nicolette S Honson, and Jeff Kuret
"Ligand polarizability contributes to tau fibril binding affinity."
Bioorg. Med. Chem. 19, 5147-54 (2011).

[7] 

Matthew B West, Stephanie Wickham, Leslie M Quinalty, Ryan E Pavlovicz, Chenglong Li, and Marie H Hanigan
"Autocatalytic cleavage of human gamma-glutamyl transpeptidase is highly dependent on N-glycosylation at asparagine 95."
J. Biol. Chem. 286, 28876-88 (2011).

[8] 

Huameng Li, Aiguo Liu, Zhenjiang Zhao, Yufang Xu, Jiayuh Lin, David Jou, and Chenglong Li
"Fragment-Based Drug Design and Drug Repositioning Using Multiple Ligand Simultaneous Docking MLSD: Identifying Celecoxib and Template Compounds as Novel Inhibitors of Signal Transducer and Activator of Transcription 3 STAT3."
J. Med. Chem. 54, 5592-6 (2011).

[9] 

Marek Simon, Justin A North, John C Shimko, Robert A Forties, Michelle B Ferdinand, Mridula Manohar, Meng Zhang, Richard Fishel, Jennifer J Ottesen, and Michael G Poirier
"Histone fold modifications control nucleosome unwrapping and disassembly."
Proc. Natl. Acad. Sci. U.S.A. 108, 12711-6 (2011).

[10] 

Yan Liu, Aiguo Liu, Huameng Li, Chenglong Li, and Jiayuh Lin
"Celecoxib Inhibits Interleukin-6/Interleukin-6 Receptor-Induced JAK2/STAT3 Phosphorylation in Human Hepatocellular Carcinoma Cells."
Cancer Prev Res Phila 4, 1296-305 (2011).

[11] 

L Lin, Y Liu, H Li, P-K Li, J Fuchs, H Shibata, Y Iwabuchi, and J Lin
"Targeting colon cancer stem cells using a new curcumin analogue, GO-Y030."
Br. J. Cancer 105, 212-20 (2011).

[12] 

Kelsey N Schafer, Dhiraj P Murale, Kibong Kim, Katryna Cisek, Jeff Kuret, and David G Churchill
"Structure-activity relationship of cyclic thiacarbocyanine tau aggregation inhibitors."
Bioorg. Med. Chem. Lett. 21, 3273-6 (2011).

[13] 

Shareef M Dabdoub, William C Ray, and Sheryl S Justice
"FIND: A new software tool and development platform for enhanced multicolor flow analysis."
BMC bioinformatics 12, 145 (2011).

[14] 

Gwendolen Lorch, Serge Viatchenko-Karpinski, Hsiang-Ting Ho, Wessel P Dirksen, Ramiro E Toribio, John Foley, Sandor Györke, and Thomas J Rosol
"The calcium-sensing receptor is necessary for the rapid development of hypercalcemia in human lung squamous cell carcinoma."
Neoplasia 13, 428-38 (2011).

[15] 

Suzanne Reed, Huameng Li, Chenglong Li, and Jiayuh Lin
"Celecoxib inhibits STAT3 phosphorylation and suppresses cell migration and colony forming ability in rhabdomyosarcoma cells."
Biochem. Biophys. Res. Commun. 407, 450-5 (2011).

[16] 

Mingming Ma, Soumitra Chatterjee, Meng Zhang, and Dennis Bong
"Stabilization of vesicular and supported membranes by glycolipid oxime polymers."
Chem. Commun. Camb. 47, 2853-5 (2011).

[17] 

Edward Chang, Sohee Kim, Kelsey N Schafer, and Jeff Kuret
"Pseudophosphorylation of tau protein directly modulates its aggregation kinetics."
Biochim. Biophys. Acta 1814, 388-95 (2011).

[18] 

Sverre E Aune, Steve T Yeh, Daniel P Zelinski, and Mark G Angelos
"Measurement of hydrogen peroxide and oxidant stress in a recirculating whole blood-perfused rat heart model."
Resuscitation 82, 222-7 (2011).

[19] 

Ross C Wilson, Angela M Smith, Ryan T Fuchs, Ian R Kleckner, Tina M Henkin, and Mark P Foster
"Tuning riboswitch regulation through conformational selection."
J. Mol. Biol. 405, 926-38 (2011).

[20] 

Bryon Mahler, Kiran Doddapaneni, Ian Kleckner, Chunhua Yuan, Graeme Wistow, and Zhengrong Wu
"Characterization of a transient unfolding intermediate in a core mutant of γS-crystallin."
J. Mol. Biol. 405, 840-50 (2011).

[21] 

Tomasz Fekner, Xin Li, and Michael K Chan
"Nonenzymatic ubiquitylation."
Chembiochem 12, 21-33 (2011).

[22] 

Shareef M Dabdoub, Sheryl S Justice, and William C Ray
"A dynamically masked gaussian can efficiently approximate a distance calculation for image segmentation."
Adv. Exp. Med. Biol. 696, 425-32 (2011).

[23] 

Ryan E Pavlovicz, Brandon J Henderson, Andrew B Bonnell, R Thomas Boyd, Dennis B McKay, and Chenglong Li
"Identification of a negative allosteric site on human α4β2 and α3β4 neuronal nicotinic acetylcholine receptors."
PLoS ONE 6, e24949 (2011).

[24] 

Andriy E Belevych, Sarah E Sansom, Radmila Terentyeva, Hsiang-Ting Ho, Yoshinori Nishijima, Mickey M Martin, Hitesh K Jindal, Jennifer A Rochira, Yukiko Kunitomo, Maha Abdellatif, Cynthia A Carnes, Terry S Elton, Sandor Györke, and Dmitry Terentyev
"MicroRNA-1 and -133 increase arrhythmogenesis in heart failure by dissociating phosphatase activity from RyR2 complex."
PLoS ONE 6, e28324 (2011).

[25] 

Jordan R Jensen, Katryna Cisek, Kristen E Funk, Swati Naphade, Kelsey N Schafer, and Jeff Kuret
"Research towards tau imaging."
J. Alzheimers Dis. 26, 147-57 (2011).

[26] 

Carlos A A Torres and Paul M L Janssen
"Contractile strength during variable heart duration is species and preload dependent."
J. Biomed. Biotechnol. 2011, 294204 (2011).

 

2010

[1] 

Brandon J Henderson, Ryan E Pavlovicz, Jerad D Allen, Tatiana F González-Cestari, Crina M Orac, Andrew B Bonnell, Michael X Zhu, R Thomas Boyd, Chenglong Li, Stephen C Bergmeier, and Dennis B McKay
"Negative allosteric modulators that target human alpha4beta2 neuronal nicotinic receptors."
J. Pharmacol. Exp. Ther. 334, 761-74 (2010).

[2] 

Xin Li, Tomasz Fekner, and Michael K Chan
"N6-2-R-propargylglycyllysine as a clickable pyrrolysine mimic."
Chem Asian J 5, 1765-9 (2010).

[3] 

Huameng Li and Chenglong Li
"Multiple ligand simultaneous docking: orchestrated dancing of ligands in binding sites of protein."
J Comput Chem 31, 2014-22 (2010).

[4] 

Ilirian Dhimitruka, Olga Grigorieva, Jay L Zweier, and Valery V Khramtsov
"Synthesis, structure, and EPR characterization of deuterated derivatives of Finland trityl radical."
Bioorg. Med. Chem. Lett. 20, 3946-9 (2010).

[5] 

S Kim, J R Jensen, K Cisek, K E Funk, S Naphade, K Schafer, and J Kuret
"Imaging as a strategy for premortem diagnosis and staging of tauopathies."
Curr Alzheimer Res 7, 230-4 (2010).

[6] 

Bin Liu, Xuehai Zhu, Chwen-Lih Chen, Keli Hu, Harold M Swartz, Yeong-Renn Chen, and Guanglong He
"Opening of the mitoKATP channel and decoupling of mitochondrial complex II and III contribute to the suppression of myocardial reperfusion hyperoxygenation."
Mol. Cell. Biochem. 337, 25-38 (2010).

[7] 

Jeff S Xu, Jiwei Huang, Ruogu Qin, George H Hinkle, Stephen P Povoski, Edward W Martin, and Ronald X Xu
"Synthesizing and binding dual-mode poly lactic-co-glycolic acid PLGA nanobubbles for cancer targeting and imaging."
Biomaterials 31, 1716-22 (2010).

[8] 

Chih-Wei Chang, Lijun Guo, Ya-Ting Kao, Jiang Li, Chuang Tan, Tanping Li, Chaitanya Saxena, Zheyun Liu, Lijuan Wang, Aziz Sancar, and Dongping Zhong
"Ultrafast solvation dynamics at binding and active sites of photolyases."
Proc. Natl. Acad. Sci. U.S.A. 107, 2914-9 (2010).

[9] 

Jiwei Huang, Jeff S Xu, and Ronald X Xu
"Heat-sensitive microbubbles for intraoperative assessment of cancer ablation margins."
Biomaterials 31, 1278-86 (2010).

[10] 

Lisa A Flynn, Angela R Blissett, Edward P Calomeni, and Gunjan Agarwal
"Inhibition of collagen fibrillogenesis by cells expressing soluble extracellular domains of DDR1 and DDR2."
J Mol Biol 395, 533-43 (2010).

 

2009

[1] 

Kiran Doddapaneni, Bryon Mahler, Ryan Pavlovicz, Adam Haushalter, Chunhua Yuan, and Zhengrong Wu
"Solution structure of RCL, a novel 2-deoxyribonucleoside 5-monophosphate N-glycosidase."
J. Mol. Biol. 394, 423-34 (2009).

[2] 

Steve T Yeh, Hsin-Ling Lee, Sverre E Aune, Chwen-Lih Chen, Yeong-Renn Chen, and Mark G Angelos
"Preservation of mitochondrial function with cardiopulmonary resuscitation in prolonged cardiac arrest in rats."
J. Mol. Cell. Cardiol. 47, 789-97 (2009).

[3] 

Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey Parvin, Tim Huang, Kun Huang, Francisco Perez, Mingxiang Teng, Lang Li, Yunlong Liu, and Tahsin Kurc
"Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research."
Proceedings IEEE Int Conf Bioinformatics Biomed 1, 392-395 (2009).

[4] 

Kenneth D Varian, Ying Xu, Carlos A A Torres, Michelle M Monasky, and Paul M L Janssen
"A random cycle length approach for assessment of myocardial contraction in isolated rabbit myocardium."
Am. J. Physiol. Heart Circ. Physiol. 297, H1940-8 (2009).

[5] 

Tennille Presley, Kaushik Vedam, Xiaoping Liu, Jay L Zweier, and Govindasamy Ilangovan
"Activation of Hsp90/NOS and increased NO generation does not impair mitochondrial respiratory chain by competitive binding at cytochrome c oxidase in low oxygen concentrations."
Cell Stress Chaperones 14, 611-27 (2009).

[6] 

Dhananjay Thakur, Shuang Deng, Thierno Baldet, and Jessica Winter
"pH sensitive CdS-iron oxide fluorescent-magnetic nanocomposites."
Nanotechnology 20, 485601 (2009).

[7] 

Cuiling Xu, Brian A Maxwell, Jessica A Brown, Likui Zhang, and Zucai Suo
"Global conformational dynamics of a Y-family DNA polymerase during catalysis."
PLoS Biol. 7, e1000225 (2009).

[8] 

Kenneth D Varian, Anusak Kijtawornrat, Subash C Gupta, Carlos A A Torres, Michelle M Monasky, Nitisha Hiranandani, Dawn A Delfin, Jill A Rafael-Fortney, Muthu Periasamy, Robert L Hamlin, and Paul M L Janssen
"Impairment of diastolic function by lack of frequency-dependent myofilament desensitization rabbit right ventricular hypertrophy."
Circ Heart Fail 2, 472-81 (2009).

[9] 

Steve T Yeh, Rebekah J Cawley, Sverre E Aune, and Mark G Angelos
"Oxygen requirement during cardiopulmonary resuscitation CPR to effect return of spontaneous circulation."
Resuscitation 80, 951-5 (2009).

[10] 

Nicole Charbonneau, Ravindra Amunugama, Christoph Schmutte, Kristine Yoder, and Richard Fishel
"Evidence that hMLH3 functions primarily in meiosis and in hMSH2-hMSH3 mismatch repair."
Cancer Biol. Ther. 8, 1411-20 (2009).

[11] 

Rohit Tiwari, Kiran Mahasenan, Ryan Pavlovicz, Chenglong Li, and Werner Tjarks
"Carborane clusters in computational drug design: a comparative docking evaluation using AutoDock, FlexX, Glide, and Surflex."
Journal of chemical information and modeling 49, 1581-9 (2009).

[12] 

Zhongfa Liu, Shujun Liu, Zhiliang Xie, Ryan E Pavlovicz, Jiejun Wu, Ping Chen, Josephine Aimiuwu, Jiuxia Pang, Deepak Bhasin, Paolo Neviani, James R Fuchs, Christoph Plass, Pui-Kai Li, Chenglong Li, Tim H-M Huang, Lai-Chu Wu, Laura Rush, Hongyan Wang, Danilo Perrotti, Guido Marcucci, and Kenneth K Chan
"Modulation of DNA methylation by a sesquiterpene lactone parthenolide."
J. Pharmacol. Exp. Ther. 329, 505-14 (2009).

[13] 

Xiaodan Su, Naduparambil K Jacob, Ravindra Amunugama, Pang-Hung Hsu, Richard Fishel, and Michael A Freitas
"Enrichment and characterization of histones by two-dimensional hydroxyapatite/reversed-phase liquid chromatography-mass spectrometry."
Anal. Biochem. 388, 47-55 (2009).

[14] 

Bin Liu, Arun K Tewari, Liwen Zhang, Kari B Green-Church, Jay L Zweier, Yeong-Renn Chen, and Guanglong He
"Proteomic analysis of protein tyrosine nitration after ischemia reperfusion injury Mitochondria as the major target."
Biochim. Biophys. Acta 1794, 476-85 (2009).

[15] 

Tatiana F Gonzlez-Cestari, Brandon J Henderson, Ryan E Pavlovicz, Susan B McKay, Raed A El-Hajj, Aravinda B Pulipaka, Crina M Orac, Damon D Reed, R Thomas Boyd, Michael X Zhu, Chenglong Li, Stephen C Bergmeier, and Dennis B McKay
"Effect of novel negative allosteric modulators of neuronal nicotinic receptors on cells expressing native and recombinant nicotinic receptors implications for drug discovery."
J. Pharmacol. Exp. Ther. 328, 504-15 (2009).

[16] 

Zhongfa Liu, Zhiliang Xie, William Jones, Ryan E Pavlovicz, Shujun Liu, Jianhua Yu, Pui-kai Li, Jiayuh Lin, Jame R Fuchs, Guido Marcucci, Chenglong Li, and Kenneth K Chan
"Curcumin is a potent DNA hypomethylation agent."
Bioorg. Med. Chem. Lett. 19, 706-9 (2009).

[17] 

Angela R Blissett, Derek Garbellini, Edward P Calomeni, Cosmin Mihai, Terry S Elton, and Gunjan Agarwal
"Regulation of collagen fibrillogenesis by cell-surface expression of kinase dead DDR2."
J. Mol. Biol. 385, 902-11 (2009).

[18] 

Cosmin Mihai, Maqsood Chotani, Terry S Elton, and Gunjan Agarwal
"Mapping of DDR1 distribution and oligomerization on the cell surface by FRET microscopy."
J Mol Biol 385, 432-45 (2009).

[19] 

B Fuh, M Sobo, L Cen, D Josiah, B Hutzen, K Cisek, D Bhasin, N Regan, L Lin, C Chan, H Caldas, S DeAngelis, C Li, P-K Li, and J Lin
"LLL-3 inhibits STAT3 activity, suppresses glioblastoma cell growth and prolongs survival in a mouse glioblastoma model."
Br. J. Cancer 100, 106-12 (2009).

[20] 

Emilia Iscru, Yelda Serinagaoglu, Karl Schilling, Jinbin Tian, Stephanie L Bowers-Kidder, Rui Zhang, James I Morgan, A Courtney DeVries, Randy J Nelson, Michael X Zhu, and John Oberdick
"Sensorimotor enhancement in mouse mutants lacking the Purkinje cell-specific Gi/o modulator, Pcp2L7."
Mol. Cell. Neurosci. 40, 62-75 (2009).

[21] 

Chris T Middleton, Kimberly de La Harpe, Charlene Su, Yu Kay Law, Carlos E Crespo-Hernández, and Bern Kohler
"DNA excited-state dynamics: from single bases to the double helix."
Annual review of physical chemistry 60, 217-39 (2009).

[22] 

Ronald X Xu, Jiwei Huang, Jeff S Xu, Duxin Sun, George H Hinkle, Edward W Martin, and Stephen P Povoski
"Fabrication of indocyanine green encapsulated biodegradable microbubbles for structural and functional imaging of cancer."
J Biomed Opt 14, 034020 (2009).

[23] 

Xin Li, Tomasz Fekner, Jennifer J Ottesen, and Michael K Chan
"A pyrrolysine analogue for site-specific protein ubiquitination."
Angew. Chem. Int. Ed. Engl. 48, 9184-7 (2009).

[24] 

Tomasz Fekner, Xin Li, Marianne M Lee, and Michael K Chan
"A pyrrolysine analogue for protein click chemistry."
Angew. Chem. Int. Ed. Engl. 48, 1633-5 (2009).

 

2008

[1] 

Dmitry Terentyev, Inna Gyrke, Andriy E Belevych, Radmila Terentyeva, Arun Sridhar, Yoshinori Nishijima, Esperanza Carcache de Blanco, Savita Khanna, Chandan K Sen, Arturo J Cardounel, Cynthia A Carnes, and Sandor Gyrke
"Redox modification of ryanodine receptors contributes to sarcoplasmic reticulum Ca2 leak in chronic heart failure."
Circ. Res. 103, 1466-72 (2008).

[2] 

Carlos D Amero, William P Boomershine, Yiren Xu, and Mark Foster
"Solution structure of Pyrococcus furiosus RPP21, a component of the archaeal RNase P holoenzyme, and interactions with its RPP29 protein partner."
Biochemistry 47, 11704-10 (2008).

[3] 

Yi Xu, Bin Liu, Jay L Zweier, and Guanglong He
"Formation of hydrogen peroxide and reduction of peroxynitrite via dismutation of superoxide at reperfusion enhances myocardial blood flow and oxygen consumption in postischemic mouse heart."
J. Pharmacol. Exp. Ther. 327, 402-10 (2008).

[4] 

Raquel M Raices, Yashaswini Kannan, Anasuya Sarkar, Vedavathi Bellamkonda-Athmaram, and Mark D Wewers
"A synergistic role for IL-1beta and TNFalpha in monocyte-derived IFNgamma inducing activity."
Cytokine 44, 234-41 (2008).

[5] 

Xianhua Cao, Guang Jia, Tao Zhang, Ming Yang, Bing Wang, Peter A Wassenaar, Hao Cheng, Michael V Knopp, and Duxin Sun
"Non-invasive MRI tumor imaging and synergistic anticancer effect of HSP90 inhibitor and glycolysis inhibitor in RIP1-Tag2 transgenic pancreatic tumor model."
Cancer Chemother. Pharmacol. 62, 985-94 (2008).

[6] 

Arun Sridhar, Yoshinori Nishijima, Dmitry Terentyev, Radmila Terentyeva, Rebecca Uelmen, Monica Kukielka, Ingrid M Bonilla, Gail A Robertson, Sandor Gyrke, George E Billman, and Cynthia A Carnes
"Repolarization abnormalities and afterdepolarizations in a canine model of sudden cardiac death."
Am. J. Physiol. Regul. Integr. Comp. Physiol. 295, R1463-72 (2008).

[7] 

Georgette N Jones, Chhavy Tep, William H Towns, Georgeta Mihai, Ian D Tonks, Graham F Kay, Petra M Schmalbrock, Anat O Stemmer-Rachamimov, Sung Ok Yoon, and Lawrence S Kirschner
"Tissue-specific ablation of Prkar1a causes schwannomas by suppressing neurofibromatosis protein production."
Neoplasia 10, 1213-21 (2008).

[8] 

Tennille Presley, Kaushik Vedam, Murugesan Velayutham, Jay L Zweier, and Govindasamy Ilangovan
"Activation of Hsp90-eNOS and increased NO generation attenuate respiration of hypoxia-treated endothelial cells."
Am. J. Physiol., Cell Physiol. 295, C1281-91 (2008).

[9] 

Ya-Ting Kao, Chaitanya Saxena, Ting-Fang He, Lijun Guo, Lijuan Wang, Aziz Sancar, and Dongping Zhong
"Ultrafast dynamics of flavins in five redox states."
J. Am. Chem. Soc. 130, 13132-9 (2008).

[10] 

Marianne M Lee, Ruisheng Jiang, Rinku Jain, Ross C Larue, Joseph Krzycki, and Michael K Chan
"Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl-tRNA synthetase."
Biochem. Biophys. Res. Commun. 374, 470-4 (2008).

[11] 

Manoj S Nair and Donald H Dean
"All domains of Cry1A toxins insert into insect brush border membranes."
J. Biol. Chem. 283, 26324-31 (2008).

[12] 

Guang Jia, Craig ODell, Johannes T Heverhagen, Xiangyu Yang, Jiachao Liang, Richard V Jacko, Steffen Sammet, Theodore Pellas, Patricia Cole, and Michael V Knopp
"Colorectal liver metastases: contrast agent diffusion coefficient for quantification of contrast enhancement heterogeneity at MR imaging."
Radiology 248, 901-9 (2008).

[13] 

Andrew S Pederzolli, Madalina E Tivarus, Punit Agrawal, Sandra K Kostyk, Karen M Thomas, and David Q Beversdorf
"Dopaminergic modulation of semantic priming in Parkinson disease."
Cognitive and behavioral neurology official journal of the Society for Behavioral and Cognitive Neurology 21, 134-7 (2008).

[14] 

Sathish Rajamani, Wolfgang D Bauer, Jayne B Robinson, John M Farrow, Everett C Pesci, Max Teplitski, Mengsheng Gao, Richard T Sayre, and Donald A Phillips
"The vitamin riboflavin and its derivative lumichrome activate the LasR bacterial quorum-sensing receptor."
Mol. Plant Microbe Interact. 21, 1184-92 (2008).

[15] 

Moacir A Torres, Marcelo P Barros, Sara C G Campos, Ernani Pinto, Satish Rajamani, Richard T Sayre, and Pio Colepicolo
"Biochemical biomarkers in algae and marine pollution a review."
Ecotoxicol. Environ. Saf. 71, 1-15 (2008).

[16] 

Clara E Isaza, Xuejun Zhong, Lucia E Rosas, James D White, Rita P-Y Chen, George F-C Liang, Sunney I Chan, Abhay R Satoskar, and Michael K Chan
"A proposed role for Leishmania major carboxypeptidase in peptide catabolism."
Biochem. Biophys. Res. Commun. 373, 25-9 (2008).

[17] 

Haiyan Liu, Judith A Enyeart, and John J Enyeart
"ACTH inhibits bTREK-1 K channels through multiple cAMP-dependent signaling pathways."
J. Gen. Physiol. 132, 279-94 (2008).

[18] 

M Judith Radin, Bethany J Holycross, Cristian Dumitrescu, Robert Kelley, and Ruth A Altschuld
"Leptin modulates the negative inotropic effect of interleukin-1beta in cardiac myocytes."
Mol. Cell. Biochem. 315, 179-84 (2008).

[19] 

Guoning Hu and DeLiang Wang
"Segregation of unvoiced speech from nonspeech interference."
J. Acoust. Soc. Am. 124, 1306-19 (2008).

[20] 

Subhojit Som, Lee C Potter, Rizwan Ahmad, Deepti S Vikram, and Periannan Kuppusamy
"EPR oximetry in three spatial dimensions using sparse spin distribution."
J. Magn. Reson. 193, 210-7 (2008).

[21] 

Charles I Jones, Zhaosheng Han, Tennille Presley, Saradhadevi Varadharaj, Jay L Zweier, Govindasamy Ilangovan, and B Rita Alevriadou
"Endothelial cell respiration is affected by the oxygen tension during shear exposure role of mitochondrial peroxynitrite."
Am. J. Physiol., Cell Physiol. 295, C180-91 (2008).

[22] 

Deepti S Vikram, Rizwan Ahmad, Ramasamy P Pandian, Sergey Petryakov, and Periannan Kuppusamy
"Evaluation of oxygen-response times of phthalocyanine-based crystalline paramagnetic spin probes for EPR oximetry."
J. Magn. Reson. 193, 127-32 (2008).

[23] 

Hyun Lee, Chunhua Yuan, Andrew Hammet, Anjali Mahajan, Eric S-W Chen, Ming-Ru Wu, Mei-I Su, Jrg Heierhorst, and Ming-Daw Tsai
"Diphosphothreonine-specific interaction between an SQ/TQ cluster and an FHA domain in the Rad53-Dun1 kinase cascade."
Mol. Cell 30, 767-78 (2008).

[24] 

Judith A Enyeart, Haiyan Liu, and John J Enyeart
"Curcumin inhibits bTREK-1 K channels and stimulates cortisol secretion from adrenocortical cells."
Biochem. Biophys. Res. Commun. 370, 623-8 (2008).

[25] 

Marianne M Lee, Michael K Chan, and Ralf Bundschuh
"Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches."
Bioinformatics 24, 1339-43 (2008).

[26] 

Xiangyu Yang, Jiachao Liang, Johannes T Heverhagen, Guang Jia, Petra Schmalbrock, Steffen Sammet, Regina Koch, and Michael V Knopp
"Improving the pharmacokinetic parameter measurement in dynamic contrast-enhanced MRI by use of the arterial input function: theory and clinical application."
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 59, 1448-56 (2008).

[27] 

Daniel F Iscru, Mirela Anghelina, Sudha Agarwal, and Gunjan Agarwal
"Changes in surface topologies of chondrocytes subjected to mechanical forces an AFM analysis."
J. Struct. Biol. 162, 397-403 (2008).

[28] 

Hari B Kamadurai, Rinku Jain, and Mark P Foster
"Crystallization and structure determination of the core-binding domain of bacteriophage lambda integrase."
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 64, 470-3 (2008).

[29] 

Rizwan Ahmad, Deepti S Vikram, Lee C Potter, and Periannan Kuppusamy
"Estimation of mean and median pO2 values for a composite EPR spectrum."
J. Magn. Reson. 192, 269-74 (2008).

[30] 

Manoj S Nair, Xinyan Sylvia Liu, and Donald H Dean
"Membrane insertion of the Bacillus thuringiensis Cry1Ab toxin single mutation in domain II block partitioning of the toxin into the brush border membrane."
Biochemistry 47, 5814-22 (2008).

[31] 

Marianne M Lee, Ralf Bundschuh, and Michael K Chan
"Distant homology detection using a LEngth and STructure-based sequence Alignment Tool LESTAT."
Proteins 71, 1409-19 (2008).

[32] 

Yu Kay Law, Javad Azadi, Carlos E Crespo-Hernndez, Eric Olmon, and Bern Kohler
"Predicting thymine dimerization yields from molecular dynamics simulations."
Biophys. J. 94, 3590-600 (2008).

[33] 

Michelle M Monasky, Kenneth D Varian, Jonathan P Davis, and Paul M L Janssen
"Dissociation of force decline from calcium decline by preload in isolated rabbit myocardium."
Pflugers Arch. 456, 267-76 (2008).

[34] 

Ken-ichi Otsuguro, Jisen Tang, Yufang Tang, Rui Xiao, Marc Freichel, Volodymyr Tsvilovskyy, Shigeo Ito, Veit Flockerzi, Michael X Zhu, and Alexander V Zholos
"Isoform-specific inhibition of TRPC4 channel by phosphatidylinositol 4,5-bisphosphate."
J. Biol. Chem. 283, 10026-36 (2008).

[35] 

Mark G Angelos, Ryan L Butke, Ashish R Panchal, Carlos A A Torres, Alan Blumberg, Jim E Schneider, and Sverre E Aune
"Cardiovascular response to epinephrine varies with increasing duration of cardiac arrest."
Resuscitation 77, 101-10 (2008).

[36] 

Yuxia Dong, Sara R Palmer, Adnan Hasona, Shushi Nagamori, H Ronald Kaback, Ross E Dalbey, and L Jeannine Brady
"Functional overlap but lack of complete cross-complementation of Streptococcus mutans and Escherichia coli YidC orthologs."
J. Bacteriol. 190, 2458-69 (2008).

[37] 

Rui Xiao, Jinbin Tian, Jisen Tang, and Michael X Zhu
"The TRPV3 mutation associated with the hairless phenotype in rodents is constitutively active."
Cell Calcium 43, 334-43 (2008).

[38] 

Vadim Cherezov, Wei Liu, Jeremy P Derrick, Binquan Luan, Aleksei Aksimentiev, Vsevolod Katritch, and Martin Caffrey
"In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin."
Proteins 71, 24-34 (2008).

[39] 

Rui Xiao, Jisen Tang, Chunbo Wang, Craig K Colton, Jinbin Tian, and Michael X Zhu
"Calcium plays a central role in the sensitization of TRPV3 channel to repetitive stimulations."
J. Biol. Chem. 283, 6162-74 (2008).

[40] 

Michelle M Monasky, Kenneth D Varian, and Paul M L Janssen
"Gender comparison of contractile performance and beta-adrenergic response in isolated rat cardiac trabeculae."
J. Comp. Physiol. B, Biochem. Syst. Environ. Physiol. 178, 307-13 (2008).

[41] 

Jonathan P Davis and Svetlana B Tikunova
"Ca2 exchange with troponin C and cardiac muscle dynamics."
Cardiovasc. Res. 77, 619-26 (2008).

[42] 

Sharon Schreiber, Mayur Savla, Denis V Pelekhov, Daniel F Iscru, Camelia Selcu, P Chris Hammel, and Gunjan Agarwal
"Magnetic force microscopy of superparamagnetic nanoparticles."
Small 4, 270-8 (2008).

[43] 

Theresa J Kannanayakal, Jerry R Mendell, and Jeff Kuret
"Casein kinase 1 alpha associates with the tau-bearing lesions of inclusion body myositis."
Neurosci. Lett. 431, 141-5 (2008).

[44] 

Deepak Bhasin, Katryna Cisek, Trupti Pandharkar, Nicholas Regan, Chenglong Li, Bulbul Pandit, Jiayuh Lin, and Pui-Kai Li
"Design, synthesis, and studies of small molecule STAT3 inhibitors."
Bioorg. Med. Chem. Lett. 18, 391-5 (2008).

[45] 

Mahmood Khan, Vijay Kumar Kutala, Sheik Wisel, Simi M Chacko, M Lakshmi Kuppusamy, Pawel Kwiatkowski, and Periannan Kuppusamy
"Measurement of oxygenation at the site of stem cell therapy in a murine model of myocardial infarction."
Adv. Exp. Med. Biol. 614, 45-52 (2008).

[46] 

Madalina E Tivarus, Ashleigh Hillier, Petra Schmalbrock, and David Q Beversdorf
"Functional connectivity in an fMRI study of semantic and phonological processes and the effect of L-Dopa."
Brain and language 104, 42-50 (2008).

[47] 

Heather L Campbell, Madalina E Tivarus, Ashleigh Hillier, and David Q Beversdorf
"Increased task difficulty results in greater impact of noradrenergic modulation of cognitive flexibility."
Pharmacol. Biochem. Behav. 88, 222-9 (2008).

[48] 

Taek H You, Mi K Lee, Jeremy L Jenkins, Oscar Alzate, and Donald H Dean
"Blocking binding of Bacillus thuringiensis Cry1Aa to Bombyx mori cadherin receptor results in only a minor reduction of toxicity."
BMC Biochem. 9, 3 (2008).

[49] 

Georgeta Mihai, Yvette S Nout, C Amy Tovar, Brandon A Miller, Petra Schmalbrock, Jacqueline C Bresnahan, and Michael S Beattie
"Longitudinal comparison of two severities of unilateral cervical spinal cord injury using magnetic resonance imaging in rats."
J. Neurotrauma 25, 1-18 (2008).

[50] 

Carlos A A Torres, Kenneth D Varian, and Paul M L Janssen
"Variability in interbeat duration influences myocardial contractility in rat cardiac trabeculae."
Open Cardiovasc Med J 2, 100-4 (2008).

 

2007

[1] 

Mingxuan Xu, Ruifeng Cao, Rui Xiao, Michael X Zhu, and Chen Gu
"The axon-dendrite targeting of Kv3 Shaw channels is determined by a targeting motif that associates with the T1 domain and ankyrin G."
J. Neurosci. 27, 14158-70 (2007).

[2] 

Hari B Kamadurai and Mark P Foster
"DNA recognition via mutual-induced fit by the core-binding domain of bacteriophage lambda integrase."
Biochemistry 46, 13939-47 (2007).

[3] 

Xin Li, Sanjay Jayachandran, Hiep-Hoa T Nguyen, and Michael K Chan
"Structure of the Nitrosomonas europaea Rh protein."
Proc. Natl. Acad. Sci. U.S.A. 104, 19279-84 (2007).

[4] 

Luyuan Zhang, Lijuan Wang, Ya-Ting Kao, Weihong Qiu, Yi Yang, Oghaghare Okobiah, and Dongping Zhong
"Mapping hydration dynamics around a protein surface."
Proc. Natl. Acad. Sci. U.S.A. 104, 18461-6 (2007).

[5] 

Anjali Mahajan, Yi Guo, Chunhua Yuan, Christopher M Weghorst, Ming-Daw Tsai, and Junan Li
"Dissection of protein-protein interaction and CDK4 inhibition in the oncogenic versus tumor suppressing functions of gankyrin and P16."
J. Mol. Biol. 373, 990-1005 (2007).

[6] 

A Sridhar, D N Q da Cunha, V A Lacombe, Q Zhou, J J Fox, R L Hamlin, and C A Carnes
"The plateau outward current in canine ventricle, sensitive to 4-aminopyridine, is a constitutive contributor to ventricular repolarization."
Br. J. Pharmacol. 152, 870-9 (2007).

[7] 

Vronique A Lacombe, Serge Viatchenko-Karpinski, Dmitry Terentyev, Arun Sridhar, Sitaramesh Emani, John D Bonagura, David S Feldman, Sandor Gyrke, and Cynthia A Carnes
"Mechanisms of impaired calcium handling underlying subclinical diastolic dysfunction in diabetes."
Am. J. Physiol. Regul. Integr. Comp. Physiol. 293, R1787-97 (2007).

[8] 

Sabeeha S Merchant, Simon E Prochnik, Olivier Vallon, Elizabeth H Harris, Steven J Karpowicz, George B Witman, Astrid Terry, Asaf Salamov, Lillian K Fritz-Laylin, Laurence Maréchal-Drouard, Wallace F Marshall, Liang-Hu Qu, David R Nelson, Anton A Sanderfoot, Martin H Spalding, Vladimir V Kapitonov, Qinghu Ren, Patrick Ferris, Erika Lindquist, Harris Shapiro, Susan M Lucas, Jane Grimwood, Jeremy Schmutz, Pierre Cardol, Heriberto Cerutti, Guillaume Chanfreau, Chun-Long Chen, Valérie Cognat, Martin T Croft, Rachel Dent, Susan Dutcher, Emilio Fernández, Hideya Fukuzawa, David González-Ballester, Diego González-Halphen, Armin Hallmann, Marc Hanikenne, Michael Hippler, William Inwood, Kamel Jabbari, Ming Kalanon, Richard Kuras, Paul A Lefebvre, Stéphane D Lemaire, Alexey V Lobanov, Martin Lohr, Andrea Manuell, Iris Meier, Laurens Mets, Maria Mittag, Telsa Mittelmeier, James V Moroney, Jeffrey Moseley, Carolyn Napoli, Aurora M Nedelcu, Krishna Niyogi, Sergey V Novoselov, Ian T Paulsen, Greg Pazour, Saul Purton, Jean-Philippe Ral, Diego Mauricio Riaño-Pachón, Wayne Riekhof, Linda Rymarquis, Michael Schroda, David Stern, James Umen, Robert Willows, Nedra Wilson, Sara Lana Zimmer, Jens Allmer, Janneke Balk, Katerina Bisova, Chong-Jian Chen, Marek Elias, Karla Gendler, Charles Hauser, Mary Rose Lamb, Heidi Ledford, Joanne C Long, Jun Minagawa, M Dudley Page, Junmin Pan, Wirulda Pootakham, Sanja Roje, Annkatrin Rose, Eric Stahlberg, Aimee M Terauchi, Pinfen Yang, Steven Ball, Chris Bowler, Carol L Dieckmann, Vadim N Gladyshev, Pamela Green, Richard Jorgensen, Stephen Mayfield, Bernd Mueller-Roeber, Sathish Rajamani, Richard T Sayre, Peter Brokstein, Inna Dubchak, David Goodstein, Leila Hornick, Y Wayne Huang, Jinal Jhaveri, Yigong Luo, Diego Martínez, Wing Chi Abby Ngau, Bobby Otillar, Alexander Poliakov, Aaron Porter, Lukasz Szajkowski, Gregory Werner, Kemin Zhou, Igor V Grigoriev, Daniel S Rokhsar, and Arthur R Grossman
"The Chlamydomonas genome reveals the evolution of key animal and plant functions."
Science 318, 245-50 (2007).

[9] 

Haiyan Liu, Judith A Enyeart, and John J Enyeart
"Potent inhibition of native TREK-1 K channels by selected dihydropyridine Ca2 channel antagonists."
J. Pharmacol. Exp. Ther. 323, 39-48 (2007).

[10] 

Mahmood Khan, Vijay Kumar Kutala, Deepti S Vikram, Sheik Wisel, Simi M Chacko, M Lakshmi Kuppusamy, Iyyapu K Mohan, Jay L Zweier, Pawel Kwiatkowski, and Periannan Kuppusamy
"Skeletal myoblasts transplanted in the ischemic myocardium enhance in situ oxygenation and recovery of contractile function."
Am. J. Physiol. Heart Circ. Physiol. 293, H2129-39 (2007).

[11] 

Catalina Norman, Jack A Rall, Svetlana B Tikunova, and Jonathan P Davis
"Modulation of the rate of cardiac muscle contraction by troponin C constructs with various calcium binding affinities."
Am. J. Physiol. Heart Circ. Physiol. 293, H2580-7 (2007).

[12] 

Deepti S Vikram, Jay L Zweier, and Periannan Kuppusamy
"Methods for noninvasive imaging of tissue hypoxia."
Antioxid. Redox Signal. 9, 1745-56 (2007).

[13] 

Rajarsi Mandal, Vijay Kumar Kutala, Mahmood Khan, Iyyapu K Mohan, Saradhadevi Varadharaj, Arun Sridhar, Cynthia A Carnes, Tams Klai, Klmn Hideg, and Periannan Kuppusamy
"N-hydroxy-pyrroline modification of verapamil exhibits antioxidant protection of the heart against ischemia/reperfusion-induced cardiac dysfunction without compromising its calcium antagonistic activity."
J. Pharmacol. Exp. Ther. 323, 119-27 (2007).

[14] 

Aditi C Kulkarni, Periannan Kuppusamy, and Narasimham Parinandi
"Oxygen, the lead actor in the pathophysiologic drama enactment of the trinity of normoxia, hypoxia, and hyperoxia in disease and therapy."
Antioxid. Redox Signal. 9, 1717-30 (2007).

[15] 

Tsuyoshi Ikura, Satoshi Tashiro, Akemi Kakino, Hiroki Shima, Naduparambil Jacob, Ravindra Amunugama, Kristine Yoder, Shunsuke Izumi, Isao Kuraoka, Kiyoji Tanaka, Hiroshi Kimura, Masae Ikura, Shuichi Nishikubo, Takashi Ito, Akihiko Muto, Kiyoshi Miyagawa, Shunichi Takeda, Richard Fishel, Kazuhiko Igarashi, and Kenji Kamiya
"DNA damage-dependent acetylation and ubiquitination of H2AX enhances chromatin dynamics."
Mol. Cell. Biol. 27, 7028-40 (2007).

[16] 

R C Venu, Yulin Jia, Malali Gowda, Melissa H Jia, Chatchawan Jantasuriyarat, Eric Stahlberg, Huameng Li, Andrew Rhineheart, Prashanth Boddhireddy, Pratibha Singh, Neil Rutger, David Kudrna, Rod Wing, James C Nelson, and Guo-Liang Wang
"RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection."
Mol. Genet. Genomics 278, 421-31 (2007).

[17] 

Ali A Hassanali and Sherwin J Singer
"Model for the water-amorphous silica interface: the undissociated surface."
The journal of physical chemistry. B 111, 11181-93 (2007).

[18] 

Cristian Dumitrescu, Roberto Biondi, Yong Xia, Arturo J Cardounel, Lawrence J Druhan, Giuseppe Ambrosio, and Jay L Zweier
"Myocardial ischemia results in tetrahydrobiopterin BH4 oxidation with impaired endothelial function ameliorated by BH4."
Proc. Natl. Acad. Sci. U.S.A. 104, 15081-6 (2007).

[19] 

Yoshinori Nishijima, Arun Sridhar, Serge Viatchenko-Karpinski, Courtney Shaw, John D Bonagura, William T Abraham, Mandar S Joshi, John Anthony Bauer, Robert L Hamlin, Sandor Gyrke, David S Feldman, and Cynthia A Carnes
"Chronic cardiac resynchronization therapy and reverse ventricular remodeling in a model of nonischemic cardiomyopathy."
Life Sci. 81, 1152-9 (2007).

[20] 

Xuehai Zhu, Bin Liu, Shaotang Zhou, Yeong-Renn Chen, Yuanmu Deng, Jay L Zweier, and Guanglong He
"Ischemic preconditioning prevents in vivo hyperoxygenation in postischemic myocardium with preservation of mitochondrial oxygen consumption."
Am. J. Physiol. Heart Circ. Physiol. 293, H1442-50 (2007).

[21] 

Jessica A Falk, Sverre E Aune, Vijay K Kutala, Periannan Kuppusamy, and Mark G Angelos
"Inhibition of peroxynitrite precursors, NO and O2, at the onset of reperfusion improves myocardial recovery."
Resuscitation 74, 508-15 (2007).

[22] 

Deepti S Vikram, Anna Bratasz, Rizwan Ahmad, and Periannan Kuppusamy
"A comparative evaluation of EPR and OxyLite oximetry using a random sampling of pO2 in a murine tumor."
Radiat. Res. 168, 308-15 (2007).

[23] 

Erin E Congdon, Mihaela Necula, Robert D Blackstone, and Jeff Kuret
"Potency of a tau fibrillization inhibitor is influenced by its aggregation state."
Arch. Biochem. Biophys. 465, 127-35 (2007).

[24] 

Rinku Jain and Michael K Chan
"Support for a potential role of E. coli oligopeptidase A in protein degradation."
Biochem. Biophys. Res. Commun. 359, 486-90 (2007).

[25] 

Haiyan Liu, Judith A Enyeart, and John J Enyeart
"Angiotensin II inhibits native bTREK-1 K channels through a PLC-, kinase C-, and PIP2-independent pathway requiring ATP hydrolysis."
Am. J. Physiol., Cell Physiol. 293, C682-95 (2007).

[26] 

Rizwan Ahmad, Deepti S Vikram, Bradley Clymer, Lee C Potter, Yuanmu Deng, Parthasarathy Srinivasan, Jay L Zweier, and Periannan Kuppusamy
"Uniform distribution of projection data for improved reconstruction quality of 4D EPR imaging."
J. Magn. Reson. 187, 277-87 (2007).

[27] 

W H Bisson, A V Cheltsov, N Bruey-Sedano, B Lin, J Chen, N Goldberger, L T May, A Christopoulos, J T Dalton, P M Sexton, X-K Zhang, and R Abagyan
"Discovery of antiandrogen activity of nonsteroidal scaffolds of marketed drugs."
Proc. Natl. Acad. Sci. U.S.A. 104, 11927-32 (2007).

[28] 

Sudarshan Seshadri, Michelle D Duncan, Judith M Hart, Mikhail A Gavrilin, and Mark D Wewers
"Pyrin levels in human monocytes and monocyte-derived macrophages regulate IL-1beta processing and release."
J. Immunol. 179, 1274-81 (2007).

[29] 

Srisunder Subramaniam, Hari B Kamadurai, and Mark P Foster
"Trans cooperativity by a split DNA recombinase the central and catalytic domains of bacteriophage lambda integrase cooperate in cleaving DNA substrates when the two domains are not covalently linked."
J. Mol. Biol. 370, 303-14 (2007).

[30] 

Guanglong He, Cristian Dumitrescu, Sergey Petryakov, Yuanmu Deng, Eric Kesselring, and Jay L Zweier
"Transverse oriented electric field re-entrant resonator TERR with automatic tuning and coupling control for EPR spectroscopy and imaging of the beating heart."
J. Magn. Reson. 187, 57-65 (2007).

[31] 

Xiaodan Su, Naduparambil K Jacob, Ravindra Amunugama, David M Lucas, Amy R Knapp, Chen Ren, Melanie E Davis, Guido Marcucci, Mark R Parthun, John C Byrd, Richard Fishel, and Michael A Freitas
"Liquid chromatography mass spectrometry profiling of histones."
J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 850, 440-54 (2007).

[32] 

Jonathan P Davis, Catalina Norman, Tomoyoshi Kobayashi, R John Solaro, Darl R Swartz, and Svetlana B Tikunova
"Effects of thin and thick filament proteins on calcium binding and exchange with cardiac troponin C."
Biophys. J. 92, 3195-206 (2007).

[33] 

Malali Gowda, R-C Venu, Huameng Li, Chatchawan Jantasuriyarat, Songbiao Chen, Maria Bellizzi, Vishal Pampanwar, HyeRan Kim, Ralph A Dean, Eric Stahlberg, Rod Wing, Cari Soderlund, and Guo-Liang Wang
"Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice."
Plant Physiol. 144, 524-33 (2007).

[34] 

Anna Bratasz, Aditi C Kulkarni, and Periannan Kuppusamy
"A highly sensitive biocompatible spin probe for imaging of oxygen concentration in tissues."
Biophys. J. 92, 2918-25 (2007).

[35] 

Sathish Rajamani, Jinge Zhu, Dehua Pei, and Richard Sayre
"A LuxP-FRET-based reporter for the detection and quantification of AI-2 bacterial quorum-sensing signal compounds."
Biochemistry 46, 3990-7 (2007).

[36] 

Weihong Qiu, Lijuan Wang, Wenyun Lu, Amanda Boechler, David A R Sanders, and Dongping Zhong
"Dissection of complex protein dynamics in human thioredoxin."
Proc. Natl. Acad. Sci. U.S.A. 104, 5366-71 (2007).

[37] 

Gunjan Agarwal, Cosmin Mihai, and Daniel F Iscru
"Interaction of discoidin domain receptor 1 with collagen type 1."
J. Mol. Biol. 367, 443-55 (2007).

[38] 

Tanping Li, Ali A Hassanali, Ya-Ting Kao, Dongping Zhong, and Sherwin J Singer
"Hydration dynamics and time scales of coupled water-protein fluctuations."
J. Am. Chem. Soc. 129, 3376-82 (2007).

[39] 

Kun-Yun Yang and Richard P Swenson
"Modulation of the redox properties of the flavin cofactor through hydrogen-bonding interactions with the N5 atom: role of alphaSer254 in the electron-transfer flavoprotein from the methylotrophic bacterium W3A1."
Biochemistry 46, 2289-97 (2007).

[40] 

Kun-Yun Yang and Richard P Swenson
"Nonresonance Raman study of the flavin cofactor and its interactions in the methylotrophic bacterium W3A1 electron-transfer flavoprotein."
Biochemistry 46, 2298-305 (2007).

[41] 

Sheik Wisel, Simi M Chacko, M Lakshmi Kuppusamy, Ramasamy P Pandian, Mahmood Khan, Vijay Kumar Kutala, Richard W Burry, Benjamin Sun, Pawel Kwiatkowski, and Periannan Kuppusamy
"Labeling of skeletal myoblasts with a novel oxygen-sensing spin probe for noninvasive monitoring of in situ oxygenation and cell therapy in heart."
Am. J. Physiol. Heart Circ. Physiol. 292, H1254-61 (2007).

[42] 

Jessica K Alexander, Ashleigh Hillier, Ryan M Smith, Madalina E Tivarus, and David Q Beversdorf
"Beta-adrenergic modulation of cognitive flexibility during stress."
Journal of cognitive neuroscience 19, 468-78 (2007).

[43] 

Rizwan Ahmad, Yuanmu Deng, Deepti S Vikram, Bradley Clymer, Parthasarathy Srinivasan, Jay L Zweier, and Periannan Kuppusamy
"Quasi Monte Carlo-based isotropic distribution of gradient directions for improved reconstruction quality of 3D EPR imaging."
J. Magn. Reson. 184, 236-45 (2007).

[44] 

Rizwan Ahmad, Bradley Clymer, Deepti S Vikram, Yuanmu Deng, Hiroshi Hirata, Jay L Zweier, and Periannan Kuppusamy
"Enhanced resolution for EPR imaging by two-step deblurring."
J. Magn. Reson. 184, 246-57 (2007).

[45] 

Mark P Foster, Craig A McElroy, and Carlos D Amero
"Solution NMR of large molecules and assemblies."
Biochemistry 46, 331-40 (2007).

[46] 

Sathish Rajamani, Surasak Siripornadulsil, Vanessa Falcao, Moacir Torres, Pio Colepicolo, and Richard Sayre
"Phycoremediation of heavy metals using transgenic microalgae."
Adv. Exp. Med. Biol. 616, 99-109 (2007).

[47] 

Ya-Ting Kao, Chaitanya Saxena, Lijuan Wang, Aziz Sancar, and Dongping Zhong
"Femtochemistry in enzyme catalysis DNA photolyase."
Cell Biochem. Biophys. 48, 32-44 (2007).

[48] 

Jason D Stoner, Thomas L Clanton, Sverre E Aune, and Mark G Angelos
"O2 delivery and redox state are determinants of compartment-specific reactive O2 species in myocardial reperfusion."
Am. J. Physiol. Heart Circ. Physiol. 292, H109-16 (2007).

[49] 

Malali Gowda, Huameng Li, and Guo-Liang Wang
"Robust analysis of 5-transcript ends: a high-throughput protocol for characterization of sequence diversity of transcription start sites."
Nat Protoc 2, 1622-32 (2007).

 

2006

[1] 

Junan Li, Anjali Mahajan, and Ming-Daw Tsai
"Ankyrin repeat a unique motif mediating protein-protein interactions."
Biochemistry 45, 15168-78 (2006).

[2] 

Tennille Presley, Periannan Kuppusamy, Jay L Zweier, and Govindasamy Ilangovan
"Electron paramagnetic resonance oximetry as a quantitative method to measure cellular respiration a consideration of oxygen diffusion interference."
Biophys. J. 91, 4623-31 (2006).

[3] 

V Cherezov, E Yamashita, W Liu, M Zhalnina, W A Cramer, and M Caffrey
"In meso structure of the cobalamin transporter, BtuB, at 1.95 A resolution."
J. Mol. Biol. 364, 716-34 (2006).

[4] 

Madalina E Tivarus, James W Ibinson, Ashleigh Hillier, Petra Schmalbrock, and David Q Beversdorf
"An fMRI study of semantic priming modulation of brain activity by varying semantic distances."
Cognitive and behavioral neurology official journal of the Society for Behavioral and Cognitive Neurology 19, 194-201 (2006).

[5] 

O Alzate, T You, M Claybon, C Osorio, A Curtiss, and D H Dean
"Effects of disulfide bridges in domain I of Bacillus thuringiensis Cry1Aa delta-endotoxin on ion-channel formation in biological membranes."
Biochemistry 45, 13597-605 (2006).

[6] 

Jongjoo Kim, Wenyun Lu, Weihong Qiu, Lijuan Wang, Martin Caffrey, and Dongping Zhong
"Ultrafast hydration dynamics in the lipidic cubic phase Discrete water structures in nanochannels."
The journal of physical chemistry. B 110, 21994-2000 (2006).

[7] 

Guang Jia, Johannes T Heverhagen, Hans Polzer, Richard V Jacko, Jiachao Liang, Jun Zhang, Andrea L Levine, Thomas J Rosol, and Michael V Knopp
"Dynamic contrast enhanced magnetic resonance imaging as a biological marker to noninvasively assess the effect of finasteride on prostatic suburethral microcirculation."
J. Urol. 176, 2299-304 (2006).

[8] 

Long-Sheng Chang, Abraham Jacob, Mark Lorenz, Jonathan Rock, Elena M Akhmametyeva, Georgeta Mihai, Petra Schmalbrock, Abhik R Chaudhury, Raul Lopez, Jyoji Yamate, Markus R John, Hannes Wickert, Brian A Neff, Edward Dodson, and D Bradley Welling
"Growth of benign and malignant schwannoma xenografts in severe combined immunodeficiency mice."
Laryngoscope 116, 2018-26 (2006).

[9] 

Arun Sridhar, Spencer J Dech, Veronique A Lacombe, Terry S Elton, Sylvia A McCune, Ruth A Altschuld, and Cynthia A Carnes
"Abnormal diastolic currents in ventricular myocytes from spontaneous hypertensive heart failure rats."
Am. J. Physiol. Heart Circ. Physiol. 291, H2192-8 (2006).

[10] 

Wei Liu and Martin Caffrey
"Interactions of tryptophan, tryptophan peptides, and tryptophan alkyl esters at curved membrane interfaces."
Biochemistry 45, 11713-26 (2006).

[11] 

Luyuan Zhang, Ya-Ting Kao, Weihong Qiu, Lijuan Wang, and Dongping Zhong
"Femtosecond studies of tryptophan fluorescence dynamics in proteins local solvation and electronic quenching."
The journal of physical chemistry. B 110, 18097-103 (2006).

[12] 

Weihong Qiu, Ya-Ting Kao, Luyuan Zhang, Yi Yang, Lijuan Wang, Wesley E Stites, Dongping Zhong, and Ahmed H Zewail
"Protein surface hydration mapped by site-specific mutations."
Proc. Natl. Acad. Sci. U.S.A. 103, 13979-84 (2006).

[13] 

Cosmin Mihai, Daniel F Iscru, Lawrence J Druhan, Terry S Elton, and Gunjan Agarwal
"Discoidin domain receptor 2 inhibits fibrillogenesis of collagen type 1."
J. Mol. Biol. 361, 864-76 (2006).

[14] 

Ryan M Smith, Madalina Tivarus, Heather L Campbell, Ashleigh Hillier, and David Q Beversdorf
"Apparent transient effects of recent "
Cognitive and behavioral neurology official journal of the Society for Behavioral and Cognitive Neurology 19, 157-64 (2006).

[15] 

Rizwan Ahmad, Deepti S Vikram, Sergey Petryakov, Yuanmu Deng, Jay L Zweier, Periannan Kuppusamy, and Bradley Clymer
"Automated on-the-fly detection and correction procedure for EPR imaging data acquisition."
Magnetic resonance in medicine official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 56, 644-53 (2006).

[16] 

Clara E Isaza, Radu Silaghi-Dumitrescu, Ramesh B Iyer, Donald M Kurtz, and Michael K Chan
"Structural basis for O2 sensing by the hemerythrin-like domain of a bacterial chemotaxis protein substrate tunnel and fluxional N terminus."
Biochemistry 45, 9023-31 (2006).

[17] 

Sitaram Asur, Pichai Raman, Matthew Eric Otey, and Srinivasan Parthasarathy
"A model-based approach for mining membrane protein crystallization trials."
Bioinformatics 22, e40-8 (2006).

[18] 

Guang Jia, Johannes T Heverhagen, Hannes Henry, Hans Polzer, Klaus T Baudendistel, Hendrik von Tengg-Kobligk, Andrea L Levine, Thomas J Rosol, and Michael V Knopp
"Pharmacokinetic parameters as a potential predictor of response to pharmacotherapy in benign prostatic hyperplasia a preclinical trial using dynamic contrast-enhanced MRI."
Magnetic resonance imaging 24, 721-5 (2006).

[19] 

Hatice Gulcin Ozer and William C Ray
"MAVL/StickWRLD analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments."
Nucleic Acids Res. 34, W133-6 (2006).

[20] 

Hong-Zhen Hu, Rui Xiao, Chunbo Wang, Na Gao, Craig K Colton, Jackie D Wood, and Michael X Zhu
"Potentiation of TRPV3 channel function by unsaturated fatty acids."
J. Cell. Physiol. 208, 201-12 (2006).

[21] 

Haiyan Liu, Sanjay J Danthi, and John J Enyeart
"Curcumin potently blocks Kv1.4 potassium channels."
Biochem. Biophys. Res. Commun. 344, 1161-5 (2006).

[22] 

Ali A Hassanali, Tanping Li, Dongping Zhong, and Sherwin J Singer
"A molecular dynamics study of Lys-Trp-Lys: structure and dynamics in solution following photoexcitation."
The journal of physical chemistry. B 110, 10497-508 (2006).

[23] 

Weihong Qiu, Luyuan Zhang, Oghaghare Okobiah, Yi Yang, Lijuan Wang, Dongping Zhong, and Ahmed H Zewail
"Ultrafast solvation dynamics of human serum albumin correlations with conformational transitions and site-selected recognition."
The journal of physical chemistry. B 110, 10540-9 (2006).

[24] 

Gang Shen, Rakhi Rajan, Jinge Zhu, Charles E Bell, and Dehua Pei
"Design and synthesis of substrate and intermediate analogue inhibitors of S-ribosylhomocysteinase."
J. Med. Chem. 49, 3003-11 (2006).

[25] 

Nitisha Hiranandani, Kenneth D Varian, Michelle M Monasky, and Paul M L Janssen
"Frequency-dependent contractile response of isolated cardiac trabeculae under hypo-, normo-, and hyperthermic conditions."
J. Appl. Physiol. 100, 1727-32 (2006).

[26] 

Theresa J Kannanayakal, Haiyang Tao, Dale D Vandre, and Jeff Kuret
"Casein kinase-1 isoforms differentially associate with neurofibrillary and granulovacuolar degeneration lesions."
Acta Neuropathol. 111, 413-21 (2006).

[27] 

Fatih Altiparmak, Hakan Ferhatosmanoglu, Selnur Erdal, and Donald C Trost
"Information mining over heterogeneous and high-dimensional time-series data in clinical trials databases."
IEEE transactions on information technology in biomedicine a publication of the IEEE Engineering in Medicine and Biology Society 10, 254-63 (2006).

[28] 

Shawn A Hamidinia, Warren L Erdahl, Clifford J Chapman, Gregory E Steinbaugh, Richard W Taylor, and Douglas R Pfeiffer
"Monensin improves the effectiveness of meso-dimercaptosuccinate when used to treat lead intoxication in rats."
Environ. Health Perspect. 114, 484-93 (2006).

[29] 

Rizwan Ahmad, Bradley Clymer, Yuanmu Deng, Guanglong He, Deepti Vikram, Periannan Kuppusamy, and Jay L Zweier
"Optimization of data acquisition for EPR imaging."
J. Magn. Reson. 179, 263-72 (2006).

[30] 

Yuanmu Deng, Keerthi Shet, Haihong Li, Periannan Kuppusamy, and Jay L Zweier
"Real-time calculation and visualization of spectra in field-cycled dynamic nuclear polarization spectroscopy."
Comput Methods Programs Biomed 82, 67-72 (2006).

[31] 

Shawn A Hamidinia, Gregory E Steinbaugh, Warren L Erdahl, Richard W Taylor, and Douglas R Pfeiffer
"Selective transport of Pb2 and Cd2 across a phospholipid bilayer by a cyclohexanemonocarboxylic acid-capped 15-crown-5 ether."
J. Inorg. Biochem. 100, 403-12 (2006).

[32] 

Haihong Li, Guanglong He, Yuanmu Deng, Periannan Kuppusamy, and Jay L Zweier
"In vivo proton electron double resonance imaging of the distribution and clearance of nitroxide radicals in mice."
Magn Reson Med 55, 669-75 (2006).

[33] 

Baocheng Pan, Ke Shi, and Muttaiya Sundaralingam
"Base-tetrad swapping results in dimerization of RNA quadruplexes implications for formation of the i-motif RNA octaplex."
Proc. Natl. Acad. Sci. U.S.A. 103, 3130-4 (2006).

[34] 

Tahsin Kurc, Daniel A Janies, Andrew D Johnson, Stephen Langella, Scott Oster, Shannon Hastings, Farhat Habib, Terry Camerlengo, David Ervin, Umit V Catalyurek, and Joel H Saltz
"An XML-based system for synthesis of data from disparate databases."
Journal of the American Medical Informatics Association : JAMIA 13, 289-301 (2006).

[35] 

Kishore Mosaliganti, Guang Jia, Johannes Heverhagen, Raghu Machiraju, Joel Saltz, and Michael Knopp
"Preventing signal degradation during elastic matching of noisy DCE-MR eye images."
Medical image computing and computer-assisted intervention MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 9, 832-9 (2006).

[36] 

Rakhi Rajan, James W Wisler, and Charles E Bell
"Probing the DNA sequence specificity of Escherichia coli RECA protein."
Nucleic Acids Res. 34, 2463-71 (2006).

[37] 

P Raman, V Cherezov, and M Caffrey
"The Membrane Protein Data Bank."
Cell. Mol. Life Sci. 63, 36-51 (2006).

[38] 

Malali Gowda, R C Venu, Mohan B Raghupathy, Kan Nobuta, Huameng Li, Rod Wing, Eric Stahlberg, Sean Couglan, Christian D Haudenschild, Ralph Dean, Baek-Hie Nahm, Blake C Meyers, and Guo-Liang Wang
"Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods."
BMC Genomics 7, 310 (2006).

[39] 

Malali Gowda, Haumeng Li, Joe Alessi, Feng Chen, Richard Pratt, and Guo-Liang Wang
"Robust analysis of 5-transcript ends 5-RATE: a novel technique for transcriptome analysis and genome annotation."
Nucleic Acids Res. 34, e126 (2006).

 

2005

[1] 

Ya-Ting Kao, Chaitanya Saxena, Lijuan Wang, Aziz Sancar, and Dongping Zhong
"Direct observation of thymine dimer repair in DNA by photolyase."
Proc. Natl. Acad. Sci. U.S.A. 102, 16128-32 (2005).

[2] 

Anjali Mahajan, Chunhua Yuan, Brietta L Pike, Jrg Heierhorst, Chi-Fon Chang, and Ming-Daw Tsai
"FHA domain-ligand interactions importance of integrating chemical and biological approaches."
J. Am. Chem. Soc. 127, 14572-3 (2005).

[3] 

Zuzana Kubalova, Dmitry Terentyev, Serge Viatchenko-Karpinski, Yoshinori Nishijima, Inna Gyrke, Radmila Terentyeva, Daise N Q da Cuha, Arun Sridhar, David S Feldman, Robert L Hamlin, Cynthia A Carnes, and Sandor Gyrke
"Abnormal intrastore calcium signaling in chronic heart failure."
Proc. Natl. Acad. Sci. U.S.A. 102, 14104-9 (2005).

[4] 

Weihong Qiu, Luyuan Zhang, Ya-Ting Kao, Wenyun Lu, Tanping Li, Jongjoo Kim, Gregory M Sollenberger, Lijuan Wang, and Dongping Zhong
"Ultrafast hydration dynamics in melittin folding and aggregation: helix formation and tetramer self-assembly."
The journal of physical chemistry. B 109, 16901-10 (2005).

[5] 

John J Enyeart, Sanjay J Danthi, Haiyan Liu, and Judith A Enyeart
"Angiotensin II inhibits bTREK-1 K channels in adrenocortical cells by separate Ca2- and ATP hydrolysis-dependent mechanisms."
J. Biol. Chem. 280, 30814-28 (2005).

[6] 

Benito Ordaz, Jisen Tang, Rui Xiao, Alfonso Salgado, Alicia Sampieri, Michael X Zhu, and Luis Vaca
"Calmodulin and calcium interplay in the modulation of TRPC5 channel activity. Identification of a novel C-terminal domain for calcium/calmodulin-mediated facilitation."
J. Biol. Chem. 280, 30788-96 (2005).

[7] 

Mihaela Necula, Carmen N Chirita, and Jeff Kuret
"Cyanine dye N744 inhibits tau fibrillization by blocking filament extension implications for the treatment of tauopathic neurodegenerative diseases."
Biochemistry 44, 10227-37 (2005).

[8] 

Mariko Kinoshita-Kawada, Jisen Tang, Rui Xiao, Shuji Kaneko, J Kevin Foskett, and Michael X Zhu
"Inhibition of TRPC5 channels by Ca2-binding protein 1 in Xenopus oocytes."
Pflugers Arch. 450, 345-54 (2005).

[9] 

Li Zuo and Thomas L Clanton
"Reactive oxygen species formation in the transition to hypoxia in skeletal muscle."
Am. J. Physiol., Cell Physiol. 289, C207-16 (2005).

[10] 

Jeff Kuret, Erin E Congdon, Guibin Li, Haishan Yin, Xian Yu, and Qi Zhong
"Evaluating triggers and enhancers of tau fibrillization."
Microsc. Res. Tech. 67, 141-55 (2005).

[11] 

Chaitanya Saxena, Haiyu Wang, I Halil Kavakli, Aziz Sancar, and Dongping Zhong
"Ultrafast dynamics of resonance energy transfer in cryptochrome."
J. Am. Chem. Soc. 127, 7984-5 (2005).

[12] 

V P Wright, P F Klawitter, D F Iscru, A J Merola, and T L Clanton
"Superoxide scavengers augment contractile but not energetic responses to hypoxia in rat diaphragm."
J. Appl. Physiol. 98, 1753-60 (2005).

[13] 

Cheng Chang, Abhijit Ray, and Peter Swaan
"In silico strategies for modeling membrane transporter function."
Drug Discov. Today 10, 663-71 (2005).

[14] 

Carmen N Chirita, Erin E Congdon, Haishan Yin, and Jeff Kuret
"Triggers of full-length tau aggregation a role for partially folded intermediates."
Biochemistry 44, 5862-72 (2005).

[15] 

Rinku Jain, Bing Hao, Ren-Peng Liu, and Michael K Chan
"Structures of E. coli peptide deformylase bound to formate insight into the preference for Fe2 over Zn2 as the active site metal."
J. Am. Chem. Soc. 127, 4558-9 (2005).

[16] 

Marina Bakhtina, Soojin Lee, Yu Wang, Chris Dunlap, Brandon Lamarche, and Ming-Daw Tsai
"Use of viscogens, dNTPalphaS, and rhodiumIII as probes in stopped-flow experiments to obtain new evidence for the mechanism of catalysis by DNA polymerase beta."
Biochemistry 44, 5177-87 (2005).

[17] 

Guang Jia, Klaus T Baudendistel, Hendrik von Tengg-Kobligk, Johannes T Heverhagen, Hans Polzer, Hannes Henry, Matthew J McAuliffe, Andrea L Levine, Thomas J Rosol, and Michael V Knopp
"Assessing prostate volume by magnetic resonance imaging a comparison of different measurement approaches for organ volume analysis."
Investigative radiology 40, 243-8 (2005).

[18] 

W Liu and M Caffrey
"Gramicidin structure and disposition in highly curved membranes."
J. Struct. Biol. 150, 23-40 (2005).

[19] 

Rakhi Rajan, Jinge Zhu, Xubo Hu, Dehua Pei, and Charles E Bell
"Crystal structure of S-ribosylhomocysteinase LuxS in complex with a catalytic 2-ketone intermediate."
Biochemistry 44, 3745-53 (2005).

[20] 

Donald W Chakeres, Chastity D S Whitaker, Roger A Dashner, Douglas W Scharre, David Q Beversdorf, Abhik Raychaudhury, and Petra Schmalbrock
"High-resolution 8 Tesla imaging of the formalin-fixed normal human hippocampus."
Clinical anatomy New York, N.Y. 18, 88-91 (2005).

[21] 

Mihaela Necula and Jeff Kuret
"Site-specific pseudophosphorylation modulates the rate of tau filament dissociation."
FEBS Lett. 579, 1453-7 (2005).

[22] 

Craig Hemann, Predrag Ilich, Amy L Stockert, Eun-Young Choi, and Russ Hille
"Resonance Raman studies of xanthine oxidase The reduced enzyme-product complex with violapterin."
The journal of physical chemistry. B 109, 3023-31 (2005).

[23] 

Haiyu Wang, Chaitanya Saxena, Donghui Quan, Aziz Sancar, and Dongping Zhong
"Femtosecond dynamics of flavin cofactor in DNA photolyase radical reduction, local solvation, and charge recombination."
The journal of physical chemistry. B 109, 1329-33 (2005).

[24] 

Jeff Kuret, Carmen N Chirita, Erin E Congdon, Theresa Kannanayakal, Guibin Li, Mihaela Necula, Haishan Yin, and Qi Zhong
"Pathways of tau fibrillization."
Biochim. Biophys. Acta 1739, 167-78 (2005).

 

2004

[1] 

Shawn A Hamidinia, Bo Tan, Warren L Erdahl, Clifford J Chapman, Richard W Taylor, and Douglas R Pfeiffer
"The ionophore nigericin transports Pb2 with high activity and selectivity a comparison to monensin and ionomycin."
Biochemistry 43, 15956-65 (2004).

[2] 

Rakhi Rajan and Charles E Bell
"Crystal structure of RecA from Deinococcus radiodurans insights into the structural basis of extreme radioresistance."
J. Mol. Biol. 344, 951-63 (2004).

[3] 

Lisa V Misquitta, Yohann Misquitta, Vadim Cherezov, Orla Slattery, Jakkam M Mohan, David Hart, Mariya Zhalnina, William A Cramer, and Martin Caffrey
"Membrane protein crystallization in lipidic mesophases with tailored bilayers."
Structure 12, 2113-24 (2004).

[4] 

Mihaela Necula and Jeff Kuret
"Pseudophosphorylation and glycation of tau protein enhance but do not trigger fibrillization in vitro."
J. Biol. Chem. 279, 49694-703 (2004).

[5] 

Michelle P Roettger, Kevin A Fiala, Susmitha Sompalli, Yuxia Dong, and Zucai Suo
"Pre-steady-state kinetic studies of the fidelity of human DNA polymerase mu."
Biochemistry 43, 13827-38 (2004).

[6] 

Yohann Misquitta, Vadim Cherezov, Fabien Havas, Suzanne Patterson, Jakkam M Mohan, Angela J Wells, David J Hart, and Martin Caffrey
"Rational design of lipid for membrane protein crystallization."
J. Struct. Biol. 148, 169-75 (2004).

[7] 

Mihaela Necula and Jeff Kuret
"A static laser light scattering assay for surfactant-induced tau fibrillization."
Anal. Biochem. 333, 205-15 (2004).

[8] 

Chunhua Yuan, Junan Li, Anjali Mahajan, Ming Jye Poi, In-Ja L Byeon, and Ming-Daw Tsai
"Solution structure of the human oncogenic protein gankyrin containing seven ankyrin repeats and analysis of its structure--function relationship."
Biochemistry 43, 12152-61 (2004).

[9] 

J T Heverhagen, H von Tengg-Kobligk, K T Baudendistel, G Jia, H Polzer, H Henry, A L Levine, T J Rosol, and M V Knopp
"Benign prostate hyperplasia evaluation of treatment response with DCE MRI."
Magma New York, N.Y. 17, 5-11 (2004).

[10] 

Brian S Palmer, Paul F Klawitter, Peter J Reiser, and Mark G Angelos
"Degradation of rat cardiac troponin I during ischemia independent of reperfusion."
Am. J. Physiol. Heart Circ. Physiol. 287, H1269-75 (2004).

[11] 

Svetlana B Tikunova and Jonathan P Davis
"Designing calcium-sensitizing mutations in the regulatory domain of cardiac troponin C."
J. Biol. Chem. 279, 35341-52 (2004).

[12] 

Li Zuo, Fievos L Christofi, Valerie P Wright, Shengying Bao, and Thomas L Clanton
"Lipoxygenase-dependent superoxide release in skeletal muscle."
J Appl Physiol 1985 97, 661-8 (2004).

[13] 

Brian S Palmer, Mersiha Hadziahmetovic, Timothy Veci, and Mark G Angelos
"Global ischemic duration and reperfusion function in the isolated perfused rat heart."
Resuscitation 62, 97-106 (2004).

[14] 

Mihaela Necula and Jeff Kuret
"Electron microscopy as a quantitative method for investigating tau fibrillization."
Anal. Biochem. 329, 238-46 (2004).

[15] 

Eun-Young Choi, Amy L Stockert, Silke Leimkhler, and Russ Hille
"Studies on the mechanism of action of xanthine oxidase."
J. Inorg. Biochem. 98, 841-8 (2004).

[16] 

Jonathan P Davis, Jack A Rall, Catalina Alionte, and Svetlana B Tikunova
"Mutations of hydrophobic residues in the N-terminal domain of troponin C affect calcium binding and exchange with the troponin C-troponin I96-148 complex and muscle force production."
J. Biol. Chem. 279, 17348-60 (2004).

[17] 

Carmen Chirita, Mihaela Necula, and Jeff Kuret
"Ligand-dependent inhibition and reversal of tau filament formation."
Biochemistry 43, 2879-87 (2004).

[18] 

Carmen N Chirita and Jeff Kuret
"Evidence for an intermediate in tau filament formation."
Biochemistry 43, 1704-14 (2004).

[19] 

Gopal J Babu, Debra Wheeler, Oscar Alzate, and Muthu Periasamy
"Solubilization of membrane proteins for two-dimensional gel electrophoresis identification of sarcoplasmic reticulum membrane proteins."
Anal. Biochem. 325, 121-5 (2004).

[20] 

Subramaniam Eswaramoorthy, Sambhorao T Rao, Baocheng Pan, and Muttaiya Sundaralingam
"Structure of the dodecamer rGAUCACUUCGGU with four 5-overhang nucleotides."
Acta Crystallogr. D Biol. Crystallogr. 60, 8-12 (2004).

[21] 

Ke Shi, Baocheng Pan, Douglas Tippin, and Muttaiya Sundaralingam
"Structures of dGm5CGm5CGCGC and dGCGCGm5CGm5C effects of methylation on alternating DNA octamers."
Acta Crystallogr. D Biol. Crystallogr. 60, 61-5 (2004).

[22] 

Paul F Klawitter and Thomas L Clanton
"Tension-time index, fatigue, and energetics in isolated rat diaphragm a new experimental model."
J. Appl. Physiol. 96, 89-95 (2004).

[23] 

Max Teplitski, Hancai Chen, Sathish Rajamani, Mengsheng Gao, Massimo Merighi, Richard T Sayre, Jayne B Robinson, Barry G Rolfe, and Wolfgang D Bauer
"Chlamydomonas reinhardtii secretes compounds that mimic bacterial signals and interfere with quorum sensing regulation in bacteria."
Plant Physiol. 134, 137-46 (2004).

 

2003

[1] 

Junpeng Deng, Baocheng Pan, and Muttaiya Sundaralingam
"Structure of dITITACAC complexed with distamycin at 1.6 A resolution."
Acta Crystallogr. D Biol. Crystallogr. 59, 2342-4 (2003).

[2] 

Dongyan Qin, Hyun Lee, Chunhua Yuan, Yong Ju, and Ming-Daw Tsai
"Identification of potential binding sites for the FHA domain of human Chk2 by in vitro binding studies."
Biochem. Biophys. Res. Commun. 311, 803-8 (2003).

[3] 

Mihaela Necula, Carmen N Chirita, and Jeff Kuret
"Rapid anionic micelle-mediated alpha-synuclein fibrillization in vitro."
J. Biol. Chem. 278, 46674-80 (2003).

[4] 

Baocheng Pan, Yong Xiong, Ke Shi, and Muttaiya Sundaralingam
"Crystal structure of a bulged RNA tetraplex at 1.1 a resolution implications for a novel binding site in RNA tetraplex."
Structure 11, 1423-30 (2003).

[5] 

Y Misquitta and M Caffrey
"Detergents destabilize the cubic phase of monoolein implications for membrane protein crystallization."
Biophys. J. 85, 3084-96 (2003).

[6] 

Savita Khanna, Sashwati Roy, Hoon Ryu, Praveen Bahadduri, Peter W Swaan, Rajiv R Ratan, and Chandan K Sen
"Molecular basis of vitamin E action tocotrienol modulates 12-lipoxygenase, a key mediator of glutamate-induced neurodegeneration."
J. Biol. Chem. 278, 43508-15 (2003).

[7] 

Li Zuo, Silviu Pasniciuc, Valerie P Wright, A John Merola, and Thomas L Clanton
"Sources for superoxide release: lessons from blockade of electron transport, NADPH oxidase, and anion channels in diaphragm."
Antioxid. Redox Signal. 5, 667-75 (2003).

[8] 

Elizabeth L Gross and Douglas C Pearson
"Brownian dynamics simulations of the interaction of Chlamydomonas cytochrome f with plastocyanin and cytochrome c6."
Biophys. J. 85, 2055-68 (2003).

[9] 

Mohd Amir F Abdullah, Oscar Alzate, Marwan Mohammad, Rebecca J McNall, Michael J Adang, and Donald H Dean
"Introduction of Culex toxicity into Bacillus thuringiensis Cry4Ba by protein engineering."
Appl. Environ. Microbiol. 69, 5343-53 (2003).

[10] 

Ke Shi, Baocheng Pan, and Muttaiya Sundaralingam
"Structure of a B-form DNA/RNA chimera dCrGdATCG complexed with daunomycin at 1.5 A resolution."
Acta Crystallogr. D Biol. Crystallogr. 59, 1377-83 (2003).

[11] 

Carmen N Chirita, Mihaela Necula, and Jeff Kuret
"Anionic micelles and vesicles induce tau fibrillization in vitro."
J. Biol. Chem. 278, 25644-50 (2003).

[12] 

Baocheng Pan, Yong Xiong, Ke Shi, Junpeng Deng, and Muttaiya Sundaralingam
"Crystal structure of an RNA purine-rich tetraplex containing adenine tetrads implications for specific binding in RNA tetraplexes."
Structure 11, 815-23 (2003).

[13] 

Baocheng Pan, Yong Xiong, Ke Shi, and Muttaiya Sundaralingam
"An eight-stranded helical fragment in RNA crystal structure implications for tetraplex interaction."
Structure 11, 825-31 (2003).

[14] 

Srisunder Subramaniam, Arun K Tewari, Simone E Nunes-Duby, and Mark P Foster
"Dynamics and DNA substrate recognition by the catalytic domain of lambda integrase."
J. Mol. Biol. 329, 423-39 (2003).

[15] 

Junpeng Deng, Yong Xiong, Baocheng Pan, and Muttaiya Sundaralingam
"Structure of an RNA dodecamer containing a fragment from SRP domain IV of Escherichia coli."
Acta Crystallogr. D Biol. Crystallogr. 59, 1004-11 (2003).

[16] 

Ke Shi, Baocheng Pan, and Muttaiya Sundaralingam
"The crystal structure of an alternating RNA heptamer rGUAUACA forming a six base-paired duplex with 3-end adenine overhangs."
Nucleic Acids Res. 31, 1392-7 (2003).

[17] 

Hari B Kamadurai, Srisunder Subramaniam, R Benjamin Jones, Kari B Green-Church, and Mark P Foster
"Protein folding coupled to DNA binding in the catalytic domain of bacteriophage lambda integrase detected by mass spectrometry."
Protein Sci. 12, 620-6 (2003).

[18] 

Rinku Jain and Michael K Chan
"Mechanisms of ligand discrimination by heme proteins."
J. Biol. Inorg. Chem. 8, 1-11 (2003).

[19] 

Boopathy Ramakrishnan, Chandra Sekharudu, Baocheng Pan, and Muttaiya Sundaralingam
"Near-atomic resolution crystal structure of an A-DNA decamer dCCCGATCGGG cobalt hexammine interaction with A-DNA."
Acta Crystallogr. D Biol. Crystallogr. 59, 67-72 (2003).

[20] 

Ye Luo, Jonathan P Davis, Svetlana B Tikunova, Lawrence B Smillie, and Jack A Rall
"Myofibrillar determinants of rate of relaxation in skinned skeletal muscle fibers."
Adv. Exp. Med. Biol. 538, 573-81; discussion 581-2 (2003).

[21] 

William C Ray and Charles J Daniels
"PACRAT a database and analysis system for archaeal and bacterial intergenic sequence features."
Nucleic Acids Res. 31, 109-13 (2003).

 

2002

[1] 

Jonathan P Davis, Jack A Rall, Peter J Reiser, Lawrence B Smillie, and Svetlana B Tikunova
"Engineering competitive magnesium binding into the first EF-hand of skeletal troponin C."
J. Biol. Chem. 277, 49716-26 (2002).

[2] 

Mark G Angelos, Holt N Murray, Robert T Gorsline, and Paul F Klawitter
"Glucose, insulin and potassium GIK during reperfusion mediates improved myocardial bioenergetics."
Resuscitation 55, 329-36 (2002).

[3] 

Vadim Cherezov, Jeffrey Clogston, Yohann Misquitta, Wissam Abdel-Gawad, and Martin Caffrey
"Membrane protein crystallization in meso lipid type-tailoring of the cubic phase."
Biophys. J. 83, 3393-407 (2002).

[4] 

Paul F Klawitter, Holt N Murray, Thomas L Clanton, Brian S Palmer, and Mark G Angelos
"Low flow after global ischemia to improve postischemic myocardial function and bioenergetics."
Crit. Care Med. 30, 2542-7 (2002).

[5] 

Surasak Siripornadulsil, Samuel Traina, Desh Pal S Verma, and Richard T Sayre
"Molecular mechanisms of proline-mediated tolerance to toxic heavy metals in transgenic microalgae."
Plant Cell 14, 2837-47 (2002).

[6] 

Bing Hao, Clara Isaza, Joseph Arndt, Michael Soltis, and Michael K Chan
"Structure-based mechanism of O2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum."
Biochemistry 41, 12952-8 (2002).

[7] 

Shawn A Hamidinia, Olga I Shimelis, Bo Tan, Warren L Erdahl, Clifford J Chapman, Gordon D Renkes, Richard W Taylor, and Douglas R Pfeiffer
"Monensin mediates a rapid and selective transport of Pb2. Possible application of monensin for the treatment of Pb2 intoxication."
J. Biol. Chem. 277, 38111-20 (2002).

[8] 

Paul F Klawitter, Holt N Murray, Thomas L Clanton, and Mark G Angelos
"Reactive oxygen species generated during myocardial ischemia enable energetic recovery during reperfusion."
Am. J. Physiol. Heart Circ. Physiol. 283, H1656-61 (2002).

[9] 

Svetlana B Tikunova, Jack A Rall, and Jonathan P Davis
"Effect of hydrophobic residue substitutions with glutamine on Ca2 binding and exchange with the N-domain of troponin C."
Biochemistry 41, 6697-705 (2002).

[10] 

Peter Rubinelli, Surasak Siripornadulsil, Fei Gao-Rubinelli, and Richard T Sayre
"Cadmium- and iron-stress-inducible gene expression in the green alga Chlamydomonas reinhardtii evidence for H43 protein function in iron assimilation."
Planta 215, 1-13 (2002).

[11] 

Hee-Jung Kim and Mark P Foster
"Characterization of Ad5 E3-14.7K, an adenoviral inhibitor of apoptosis structure, oligomeric state, and metal binding."
Protein Sci. 11, 1117-28 (2002).

[12] 

Cristian Dumitrescu, Prakash Narayan, Yuanna Cheng, Igor R Efimov, and Ruth A Altschuld
"Phase I and phase II of short-term mechanical restitution in perfused rat left ventricles."
Am. J. Physiol. Heart Circ. Physiol. 282, H1311-9 (2002).

[13] 

Cristian Dumitrescu, Prakash Narayan, Igor R Efimov, Yuanna Cheng, M Judith Radin, Sylvia A McCune, and Ruth A Altschuld
"Mechanical alternans and restitution in failing SHHF rat left ventricles."
Am. J. Physiol. Heart Circ. Physiol. 282, H1320-6 (2002).

[14] 

Muttaiya Sundaralingam and Baocheng Pan
"Hydrogen and hydration of DNA and RNA oligonucleotides."
Biophys. Chem. 95, 273-82 (2002).

[15] 

Sheref S Mansy, Yong Xiong, Craig Hemann, Russ Hille, M Sundaralingam, and J A Cowan
"Crystal structure and stability studies of C77S HiPIP a serine ligated 4Fe-4S cluster."
Biochemistry 41, 1195-201 (2002).

[16] 

Li Zuo and Thomas L Clanton
"Detection of reactive oxygen and nitrogen species in tissues using redox-sensitive fluorescent probes."
Meth. Enzymol. 352, 307-25 (2002).

[17] 

J David Johnson and Svetlana B Tikunova
"Fluorescence methods for measuring calcium affinity and calcium exchange with proteins."
Methods Mol. Biol. 173, 89-102 (2002).

 

2001

[1] 

E Wang, W L Erdahl, S A Hamidinia, C J Chapman, R W Taylor, and D R Pfeiffer
"Transport properties of the calcium ionophore ETH-129."
Biophys. J. 81, 3275-84 (2001).

[2] 

W C Ray, R S Munson, and C J Daniels
"Tricross using dot-plots in sequence-id space to detect uncataloged intergenic features."
Bioinformatics 17, 1105-12 (2001).

[3] 

J Deng, Y Xiong, and M Sundaralingam
"X-ray analysis of an RNA tetraplex UGGGGU4 with divalent Sr2 ions at subatomic resolution 0.61 A."
Proc. Natl. Acad. Sci. U.S.A. 98, 13665-70 (2001).

[4] 

Y Xiong, J Deng, C Sudarsanakumar, and M Sundaralingam
"Crystal structure of an RNA duplex rgugucgcac2 with uridine bulges."
J. Mol. Biol. 313, 573-82 (2001).

[5] 

J Deng, Y Xiong, C Sudarsanakumar, K Shi, and M Sundaralingam
"Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges a novel intramolecular UA x U base triple."
RNA 7, 1425-31 (2001).

[6] 

Y Misquitta and M Caffrey
"Rational design of lipid molecular structure a case study involving the C191c10 monoacylglycerol."
Biophys. J. 81, 1047-58 (2001).

[7] 

J Ren, H Z Hu, A M Starodub, and J D Wood
"Galanin suppresses calcium conductance and activates inwardly rectifying potassium channels in myenteric neurones from guinea-pig small intestine."
Neurogastroenterol. Motil. 13, 247-54 (2001).

[8] 

T L Clanton and P F Klawitter
"Invited review Adaptive responses of skeletal muscle to intermittent hypoxia the known and the unknown."
J. Appl. Physiol. 90, 2476-87 (2001).

[9] 

F Chang, L H Bradley, and R P Swenson
"Evaluation of the hydrogen bonding interactions and their effects on the oxidation-reduction potentials for the riboflavin complex of the Desulfovibrio vulgaris flavodoxin."
Biochim. Biophys. Acta 1504, 319-28 (2001).

[10] 

S B Tikunova, D J Black, J D Johnson, and J P Davis
"Modifying Mg2 binding and exchange with the N-terminal of calmodulin."
Biochemistry 40, 3348-53 (2001).

[11] 

Z Zhang, J Tang, S Tikunova, J D Johnson, Z Chen, N Qin, A Dietrich, E Stefani, L Birnbaumer, and M X Zhu
"Activation of Trp3 by inositol 1,4,5-trisphosphate receptors through displacement of inhibitory calmodulin from a common binding domain."
Proc. Natl. Acad. Sci. U.S.A. 98, 3168-73 (2001).

[12] 

M W Foster, S Bian, K K Surerus, and J A Cowan
"Elucidation of a 4Fe-4S cluster degradation pathway rapid kinetic studies of the degradation of Chromatium vinosum HiPIP."
J. Biol. Inorg. Chem. 6, 266-74 (2001).

[13] 

E P Alcantara, O Alzate, M K Lee, A Curtiss, and D H Dean
"Role of alpha-helix seven of Bacillus thuringiensis Cry1Ab delta-endotoxin in membrane insertion, structural stability, and ion channel activity."
Biochemistry 40, 2540-7 (2001).

[14] 

S Arnold, A Curtiss, D H Dean, and O Alzate
"The role of a proline-induced broken-helix motif in alpha-helix 2 of Bacillus thuringiensis delta-endotoxins."
FEBS Lett. 490, 70-4 (2001).

[15] 

W C Ray and C J Daniels
"The PACRAT system an extensible WWW-based system for correlated sequence retrieval, storage and analysis."
Bioinformatics 17, 100-4 (2001).

 

2000

[1] 

D J Black, S B Tikunova, J D Johnson, and J P Davis
"Acid pairs increase the N-terminal Ca2 affinity of CaM by increasing the rate of Ca2 association."
Biochemistry 39, 13831-7 (2000).

[2] 

J Deng and M Sundaralingam
"Synthesis and crystal structure of an octamer RNA rguguuuac/rguaggcac with G.G/U.U tandem wobble base pairs comparison with other tandem G.U pairs."
Nucleic Acids Res. 28, 4376-81 (2000).

[3] 

L Zuo, F L Christofi, V P Wright, C Y Liu, A J Merola, L J Berliner, and T L Clanton
"Intra- and extracellular measurement of reactive oxygen species produced during heat stress in diaphragm muscle."
Am. J. Physiol., Cell Physiol. 279, C1058-66 (2000).

[4] 

Y Xiong and M Sundaralingam
"Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge."
RNA 6, 1316-24 (2000).

[5] 

A M Starodub and J D Wood
"Histamine suppresses A-type potassium current in myenteric neurons from guinea pig small intestine."
J. Pharmacol. Exp. Ther. 294, 555-61 (2000).

[6] 

C Sudarsanakumar, Y Xiong, and M Sundaralingam
"Crystal structure of an adenine bulge in the RNA chain of a DNA.RNA hybrid, dCTCCTCTTC.rgaagagagag."
J. Mol. Biol. 299, 103-12 (2000).

[7] 

Y Xiong and M Sundaralingam
"Crystal structure of a DNA.RNA hybrid duplex with a polypurine RNA rgaagaagag and a complementary polypyrimidine DNA dCTCTTCTTC."
Nucleic Acids Res. 28, 2171-6 (2000).

[8] 

M G Angelos, C A Torres, M D Waite, D P Rath, H Zhu, P D Beckley, B S Palmer, and P M Robitaille
"Left ventricular myocardial adenosine triphosphate changes during reperfusion of ventricular fibrillation: the influence of flow and epinephrine."
Crit. Care Med. 28, 1503-8 (2000).

[9] 

A M Starodub and J D Wood
"Histamine H2 receptor activated chloride conductance in myenteric neurons from guinea pig small intestine."
J. Neurophysiol. 83, 1809-16 (2000).

[10] 

A M Starodub and J D Wood
"A-type potassium current in myenteric neurons from guinea-pig small intestine."
Neuroscience 99, 389-96 (2000).

 

1999

[1] 

R Kondo, S B Tikunova, M J Cho, and J D Johnson
"A point mutation in a plant calmodulin is responsible for its inhibition of nitric-oxide synthase."
J. Biol. Chem. 274, 36213-8 (1999).

[2] 

T L Clanton, L Zuo, and P Klawitter
"Oxidants and skeletal muscle function: physiologic and pathophysiologic implications."
Proc Soc Exp Biol Med 222, 253-62 (1999).

[3] 

M Audtho, A P Valaitis, O Alzate, and D H Dean
"Production of chymotrypsin-resistant Bacillus thuringiensis Cry2Aa1 delta-endotoxin by protein engineering."
Appl. Environ. Microbiol. 65, 4601-5 (1999).

[4] 

M G Angelos, C A Torres, D P Rath, H Zhu, P D Beckley, and P M Robitaille
"In-vivo myocardial substrate alteration during perfused ventricular fibrillation."
Academic emergency medicine : official journal of the Society for Academic Emergency Medicine 6, 581-7 (1999).

[5] 

F C Chang and R P Swenson
"The midpoint potentials for the oxidized-semiquinone couple for Gly57 mutants of the Clostridium beijerinckii flavodoxin correlate with changes in the hydrogen-bonding interaction with the proton on N5 of the reduced flavin mononucleotide cofactor as measured by NMR chemical shift temperature dependencies."
Biochemistry 38, 7168-76 (1999).

[6] 

J P Davis, S B Tikunova, M P Walsh, and J D Johnson
"Characterizing the response of calcium signal transducers to generated calcium transients."
Biochemistry 38, 4235-44 (1999).

[7] 

B Pan, S N Mitra, and M Sundaralingam
"Crystal structure of an RNA 16-mer duplex RGCAGAGUUAAAUCUGC2 with nonadjacent Gsyn.Aanti mispairs."
Biochemistry 38, 2826-31 (1999).

[8] 

A V Zholos, L V Baidan, A M Starodub, and J D Wood
"Potassium channels of myenteric neurons in guinea-pig small intestine."
Neuroscience 89, 603-18 (1999).

[9] 

M Xia, R Dempski, and R Hille
"The reductive half-reaction of xanthine oxidase. Reaction with aldehyde substrates and identification of the catalytically labile oxygen."
J. Biol. Chem. 274, 3323-30 (1999).

[10] 

A M Starodub and J D Wood
"Selectivity of omega-CgTx-MVIIC toxin from Conus magus on calcium currents in enteric neurons."
Life Sci. 64, PL305-10 (1999).

 

1998

[1] 

B Pan, S N Mitra, L Sun, D Hart, and M Sundaralingam
"Crystal structure of an RNA octamer duplex rCCCIUGGG2 incorporating tandem I.U wobbles."
Nucleic Acids Res. 26, 5699-706 (1998).

[2] 

Y Xiong and M Sundaralingam
"Crystal structure and conformation of a DNA-RNA hybrid duplex with a polypurine RNA strand dTTCTTBr5CTTC-rGAAGAAGAA."
Structure 6, 1493-501 (1998).

[3] 

D C Pearson and E L Gross
"Brownian dynamics study of the interaction between plastocyanin and cytochrome f."
Biophys. J. 75, 2698-711 (1998).

[4] 

B Pan, S N Mitra, and M Sundaralingam
"Structure of a 16-mer RNA duplex rGCAGACUUAAAUCUGC2 with wobble C.A mismatches."
J. Mol. Biol. 283, 977-84 (1998).

[5] 

P M Robitaille, A M Abduljalil, A Kangarlu, X Zhang, Y Yu, R Burgess, S Bair, P Noa, L Yang, H Zhu, B Palmer, Z Jiang, D M Chakeres, and D Spigos
"Human magnetic resonance imaging at 8 T."
NMR in biomedicine 11, 263-5 (1998).

[6] 

E Wang, R W Taylor, and D R Pfeiffer
"Mechanism and specificity of lanthanide series cation transport by ionophores A23187, 4-BrA23187, and ionomycin."
Biophys. J. 75, 1244-54 (1998).

[7] 

P A Wahr, J D Johnson, and J A Rall
"Determinants of relaxation rate in skinned frog skeletal muscle fibers."
Am. J. Physiol. 274, C1608-15 (1998).

[8] 

J Michael ODonnell, P Narayan, M Q Bailey, A M Abduljalil, R A Altschuld, S A McCune, and P M Robitaille
"31P-NMR analysis of congestive heart failure in the SHHF/Mcc-facp rat heart."
J. Mol. Cell. Cardiol. 30, 235-41 (1998).

[9] 

R M Phillips, P Narayan, A M Gmez, K Dilly, L R Jones, W J Lederer, and R A Altschuld
"Sarcoplasmic reticulum in heart failure central player or bystander"
Cardiovasc. Res. 37, 346-51 (1998).

[10] 

J A Rall and P A Wahr
"Role of calcium and crossbridges in modulation of rates of force development and relaxation in skinned muscle fibers."
Adv. Exp. Med. Biol. 453, 219-27; discussion 227-8 (1998).

[11] 

M Narayan and L J Berliner
"Mapping fatty acid binding to beta-lactoglobulin Ligand binding is restricted by modification of Cys 121."
Protein Sci. 7, 150-7 (1998).

 

1997

[1] 

K M Cawthern, M Narayan, D Chaudhuri, E A Permyakov, and L J Berliner
"Interactions of alpha-lactalbumin with fatty acids and spin label analogs."
J. Biol. Chem. 272, 30812-6 (1997).

[2] 

B Pan, C Ban, M C Wahl, and M Sundaralingam
"Crystal structure of dGCGCGCG with 5-overhang G residues."
Biophys. J. 73, 1553-61 (1997).

[3] 

M Xia, P Ilich, R Dempski, and R Hille
"Recent mechanistic studies of xanthine oxidase."
Biochem. Soc. Trans. 25, 768-73 (1997).

[4] 

L M Rellick and W J Becktel
"Comparison of van der Waals and semiempirical calculations of the molecular volumes of small molecules and proteins."
Biopolymers 42, 191-202 (1997).

[5] 

F C Chang and R P Swenson
"Regulation of oxidation-reduction potentials through redox-linked ionization in the Y98H mutant of the Desulfovibrio vulgaris Hildenborough flavodoxin direct proton nuclear magnetic resonance spectroscopic evidence for the redox-dependent shift in the pKa of Histidine-98."
Biochemistry 36, 9013-21 (1997).

[6] 

M Narayan, L J Berliner, A J Merola, P T Diaz, and T L Clanton
"Biological reactions of peroxynitrite evidence for an alternative pathway of salicylate hydroxylation."
Free Radic. Res. 27, 63-72 (1997).

[7] 

P A Wahr and J A Rall
"Role of calcium and cross bridges in determining rate of force development in frog muscle fibers."
Am. J. Physiol. 272, C1664-71 (1997).

[8] 

M Narayan and L J Berliner
"Fatty acids and retinoids bind independently and simultaneously to beta-lactoglobulin."
Biochemistry 36, 1906-11 (1997).

[9] 

K Ratnam, N Shiraishi, W H Campbell, and R Hille
"Spectroscopic and kinetic characterization of the recombinant cytochrome c reductase fragment of nitrate reductase. Identification of the rate-limiting catalytic step."
J. Biol. Chem. 272, 2122-8 (1997).

 

1996

[1] 

F Rajamohan, O Alzate, J A Cotrill, A Curtiss, and D H Dean
"Protein engineering of Bacillus thuringiensis delta-endotoxin: mutations at domain II of CryIAb enhance receptor affinity and toxicity toward gypsy moth larvae."
Proc. Natl. Acad. Sci. U.S.A. 93, 14338-43 (1996).

[2] 

S Bian, C F Hemann, R Hille, and J A Cowan
"Characterization of an autoreduction pathway for the Fe4S43 cluster of mutant Chromatium vinosum high-potential iron proteins. Site-directed mutagenesis studies to probe the role of phenylalanine 66 in defining the stability of the Fe4S4 center provide evidence for oxidative degradation via a Fe3S4 cluster."
Biochemistry 35, 14544-52 (1996).

[3] 

W L Erdahl, C J Chapman, E Wang, R W Taylor, and D R Pfeiffer
"Ionophore 4-BrA23187 transports Zn2 and Mn2 with high selectivity over Ca2."
Biochemistry 35, 13817-25 (1996).

[4] 

A Soriano, D Li, S Bian, A Agarwal, and J A Cowan
"Factors influencing redox thermodynamics and electron self-exchange for the Fe4S4 cluster in Chromatium vinosum high potential iron protein the role of core aromatic residues in defining cluster redox chemistry."
Biochemistry 35, 12479-86 (1996).

[5] 

C R Ingling, J P Barley, and N Ghani
"Chromatic content of spectral lights."
Vision Res. 36, 2537-51 (1996).

[6] 

D C Pearson, E L Gross, and E S David
"Electrostatic properties of cytochrome f implications for docking with plastocyanin."
Biophys. J. 71, 64-76 (1996).

[7] 

K Ratnam, M S Brody, and R Hille
"Purification of xanthine dehydrogenase and sulfite oxidase from chicken liver."
Prep. Biochem. Biotechnol. 26, 143-54 (1996).

 

1995

[1] 

K Ratnam, N Shiraishi, W H Campbell, and R Hille
"Spectroscopic and kinetic characterization of the recombinant wild-type and C242S mutant of the cytochrome b reductase fragment of nitrate reductase."
J. Biol. Chem. 270, 24067-72 (1995).

[2] 

M G Ryan, K Ratnam, and R Hille
"The molybdenum centers of xanthine oxidase and xanthine dehydrogenase. Determination of the spectral change associated with reduction from the MoVI to the MoIV state."
J. Biol. Chem. 270, 19209-12 (1995).

[3] 

P Narayan, S A McCune, P M Robitaille, C M Hohl, and R A Altschuld
"Mechanical alternans and the force-frequency relationship in failing rat hearts."
J. Mol. Cell. Cardiol. 27, 523-30 (1995).

 

1994

[1] 

J D Johnson, R J Nakkula, C Vasulka, and L B Smillie
"Modulation of Ca2 exchange with the Ca2-specific regulatory sites of troponin C."
J. Biol. Chem. 269, 8919-23 (1994).

[2] 

R A Altschuld, D W Jung, R M Phillips, P Narayan, L C Castillo, T E Whitaker, J Hensley, C M Hohl, and G P Brierley
"Evidence against norepinephrine-stimulated efflux of mitochondrial Mg2 from intact cardiac myocytes."
Am. J. Physiol. 266, H1103-11 (1994).

 

1993

[1] 

K Ratnam and R Hille
"Paradoxical stabilization of the neutral flavin semiquinone of xanthine dehydrogenase at high pH."
Biochem. Biophys. Res. Commun. 194, 1097-102 (1993).

[2] 

R Kasturi, C Vasulka, and J D Johnson
"Ca2, caldesmon, and myosin light chain kinase exchange with calmodulin."
J. Biol. Chem. 268, 7958-64 (1993).

 

1992

[1] 

E L Gross, J E Draheim, A S Curtiss, B Crombie, A Scheffer, B Pan, C Chiang, and A Lopez
"Thermal denaturation of plastocyanin the effect of oxidation state, reductants, and anaerobicity."
Arch. Biochem. Biophys. 298, 413-9 (1992).

 

1991

[1] 

B T Stokes, R A Altschuld, C M Hohl, Q Li, and D K Anderson
"Energy depletion in culture. Adenine nucleotides are altered as in vivo."
Mol. Chem. Neuropathol. 15, 29-35 (1991).

 

1990

[1] 

S R Durell, C H Lee, R T Ross, and E L Gross
"Factor analysis of the near-ultraviolet absorption spectrum of plastocyanin using bilinear, trilinear, and quadrilinear models."
Arch. Biochem. Biophys. 278, 148-60 (1990).

[2] 

E L Gross, A Curtiss, S R Durell, and D White
"Chemical modification of spinach plastocyanin using 4-chloro-3,5-dinitrobenzoic acid characterization of four singly-modified forms."
Biochim. Biophys. Acta 1016, 107-14 (1990).

[3] 

S R Durell, J K Labanowski, and E L Gross
"Modeling of the electrostatic potential field of plastocyanin."
Arch. Biochem. Biophys. 277, 241-54 (1990).

[4] 

H Ebata, J S Mills, K Nemcek, and J D Johnson
"Calcium binding to extracellular sites of skeletal muscle calcium channels regulates dihydropyridine binding."
J. Biol. Chem. 265, 177-82 (1990).

[5] 

C R Ingling and S S Grigsby
"Perceptual correlates of magnocellular and parvocellular channels seeing form and depth in afterimages."
Vision Res. 30, 823-8 (1990).

[6] 

Q Li, B Biagi, C Hohl, R Starling, B Stokes, and R Altschuld
"Effects of isoproterenol and caffeine on calcium transients and action potentials in human ventricular cardiomyocytes."
Prog. Clin. Biol. Res. 327, 743-50 (1990).

 

1989

[1] 

Q Li, Z Guan, B A Biagi, B T Stokes, and R A Altschuld
"Hyperthyroid adult rat cardiomyocytes. II. Single cell electrophysiology and free calcium transients."
Am. J. Physiol. 257, C957-63 (1989).

[2] 

Q Li, C M Hohl, R A Altschuld, and B T Stokes
"Energy depletion-repletion and calcium transients in single cardiomyocytes."
Am. J. Physiol. 257, C427-34 (1989).

 

1988

[1] 

S R Durell, E L Gross, and J E Draheim
"Analysis of the near-ultraviolet absorption and circular dichroic spectra of parsley plastocyanin for the effects of pH and copper center conformation changes."
Arch. Biochem. Biophys. 267, 217-27 (1988).

[2] 

Q A Li, R A Altschuld, and B T Stokes
"Myocyte deenergization and intracellular free calcium dynamics."
Am. J. Physiol. 255, C162-8 (1988).

[3] 

J S Mills, M P Walsh, K Nemcek, and J D Johnson
"Biologically active fluorescent derivatives of spinach calmodulin that report calmodulin target protein binding."
Biochemistry 27, 991-6 (1988).

 

1987

[1] 

G P Anderson, D G Sanderson, C H Lee, S Durell, L B Anderson, and E L Gross
"The effect of ethylenediamine chemical modification of plastocyanin on the rate of cytochrome f oxidation and P-700 reduction."
Biochim. Biophys. Acta 894, 386-98 (1987).

 

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