Publications | Biophysics Graduate Program

Title	Investigators	Year
Mapping cellular Fe-S cluster uptake and exchange reactions - divergent pathways for iron-sulfur cluster delivery to human ferredoxins	Insiya Fidai, Christine Wachnowsky, J A Cowan	2016
Mechanism of Error-Free Bypass of the Environmental Carcinogen N-(2'-Deoxyguanosin-8-yl)-3-aminobenzanthrone Adduct by Human DNA Polymerase η	Amritraj Patra, Dustin A Politica, Arindom Chatterjee, E John Tokarsky, Zucai Suo, Ashis K Basu, Michael P Stone, Martin Egli	2016
Methods for Investigating DNA Accessibility with Single Nucleosomes	M D Gibson, M Brehove, Y Luo, J North, M G Poirier	2016
Myofilament Calcium Sensitivity: Consequences of the Effective Concentration of Troponin I	Jalal K Siddiqui, Svetlana B Tikunova, Shane D Walton, Bin Liu, Meredith Meyer, Pieter P de Tombe, Nathan Neilson, Peter M Kekenes-Huskey, Hussam E Salhi, Paul M L Janssen, Brandon J Biesiadecki, Jonathan P Davis	2016
Myofilament Calcium Sensitivity: Mechanistic Insight into TnI Ser-23/24 and Ser-150 Phosphorylation Integration	Hussam E Salhi, Nathan C Hassel, Jalal K Siddiqui, Elizabeth A Brundage, Mark T Ziolo, Paul M L Janssen, Jonathan P Davis, Brandon J Biesiadecki	2016
Polarization charge: Theory and applications to aqueous interfaces	Bobo Shi, Mithila V Agnihotri, Si-Han Chen, Richie Black, Sherwin J Singer	2016
Pre-steady-state kinetic investigation of bypass of a bulky guanine lesion by human Y-family DNA polymerases	E John Tokarsky, Varun V Gadkari, Walter J Zahurancik, Chanchal K Malik, Ashis K Basu, Zucai Suo	2016
Probing Nucleosome Stability with a DNA Origami Nanocaliper	Jenny V Le, Yi Luo, Michael A Darcy, Christopher R Lucas, Michelle F Goodwin, Michael G Poirier, Carlos E Castro	2016
Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integration	Nathan D Jones, Miguel A Lopez Jr, Jeungphill Hanne, Mitchell B Peake, Jong-Bong Lee, Richard Fishel, Kristine E Yoder	2016
The Impact of Secondhand Smoke Exposure on Children with Cystic Fibrosis: A Review	Benjamin T Kopp, Juan Antonio Ortega-García, Christy Sadreameli, Jack Wellmerling, Estelle Cormet-Boyaka, Rohan Thompson, Sharon McGrath-Morrow, Judith A Groner	2016
3D Characterization of corneal deformation using ultrasound speckle tracking	Keyton Clayson, Elias Pavlatos, Yanhui Ma, Jun Liu	2017
Analysis of NFU-1 metallocofactor binding-site substitutions-impacts on iron-sulfur cluster coordination and protein structure and function	Nathaniel A Wesley, Christine Wachnowsky, Insiya Fidai, J A Cowan	2017
Analysis of Structure-Activity Relationships Based on the Hepatitis C Virus SLIIb Internal Ribosomal Entry Sequence RNA-Targeting GGHYRFK⋅Cu Complex	Martin James Ross, Insiya Fidai, James A Cowan	2017
Biomolecules at the amorphous silica/water interface: Binding and fluorescence anisotropy of peptides	Bobo Shi, Yun Kyung Shin, Ali A Hassanali, Sherwin J Singer	2017
Broadband, monochromatic and quasi-monochromatic x-ray propagation in multi-Z media for imaging and diagnostics	Maximillian S Westphal, Sara N Lim, Sultana N Nahar, Enam Chowdhury, Anil K Pradhan	2017
Corneoscleral stiffening increases IOP spike magnitudes during rapid microvolumetric change in the eye	Keyton Clayson, Xueliang Pan, Elias Pavlatos, Ryan Short, Hugh Morris, Richard T Hart, Jun Liu	2017
Divergent Soybean Calmodulins Respond Similarly to Calcium Transients: Insight into Differential Target Regulation	Shane D Walton, Harshini Chakravarthy, Vikram Shettigar, Andrew J O'Neil, Jalal K Siddiqui, Benjamin R Jones, Svetlana B Tikunova, Jonathan P Davis	2017
Experimental and DFT Investigations Reveal the Influence of the Outer Coordination Sphere on the Vibrational Spectra of Nickel-Substituted Rubredoxin, a Model Hydrogenase Enzyme	Jeffrey W Slater, Sean C Marguet, Sabrina L Cirino, Pearson T Maugeri, Hannah S Shafaat	2017
Graph Theory and Brain Connectivity in Alzheimer's Disease	Jon delEtoile, Hojjat Adeli	2017
Magnetic mapping of iron in rodent spleen	Angela R Blissett, Brooke Ollander, Brittany Penn, Dana M McTigue, Gunjan Agarwal	2017
Mechanistic Models Fit to Variable Temperature Calorimetric Data Provide Insights into Cooperativity	Elihu C Ihms, Ian R Kleckner, Paul Gollnick, Mark P Foster	2017
Photolyase: Dynamics and electron-transfer mechanisms of DNA repair	Meng Zhang, Lijuan Wang, Dongping Zhong	2017
Significant impact of divalent metal ions on the fidelity, sugar selectivity, and drug incorporation efficiency of human PrimPol	E John Tokarsky, Petra C Wallenmeyer, Kenneth K Phi, Zucai Suo	2017
Understanding the molecular basis for multiple mitochondrial dysfunctions syndrome 1 (MMDS1): impact of a disease-causing Gly189Arg substitution on NFU1	Nathaniel A Wesley, Christine Wachnowsky, Insiya Fidai, J A Cowan	2017
Understanding the Molecular Basis of Multiple Mitochondrial Dysfunctions Syndrome 1 (MMDS1)-Impact of a Disease-Causing Gly208Cys Substitution on Structure and Activity of NFU1 in the Fe/S Cluster Biosynthetic Pathway	Christine Wachnowsky, Nathaniel A Wesley, Insiya Fidai, J A Cowan	2017