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Publications

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Title Investigators Year
From sequencer to supercomputer: an automatic pipeline for managing and processing next generation sequencing data Terry Camerlengo, Hatice Gulcin Ozer, Raghuram Onti-Srinivasan, Pearlly Yan, Tim Huang, Jeffrey Parvin, Kun Huang 2012
GUARDD: user-friendly MATLAB software for rigorous analysis of CPMG RD NMR data Ian R Kleckner, Mark P Foster 2012
Identification of an unfolding intermediate for a DNA lesion bypass polymerase Shanen M Sherrer, Brian A Maxwell, Lindsey R Pack, Kevin A Fiala, Jason D Fowler, Jun Zhang, Zucai Suo 2012
Kinetic basis for the differing response to an oxidative lesion by a replicative and a lesion bypass DNA polymerase from Sulfolobus solfataricus Brian A Maxwell, Zucai Suo 2012
Ligand electronic properties modulate tau filament binding site density Katryna Cisek, Jordan R Jensen, Nicolette S Honson, Kelsey N Schafer, Grace L Cooper, Jeff Kuret 2012
Mechanisms of allosteric gene regulation by NMR quantification of microsecond-millisecond protein dynamics Ian R Kleckner, Paul Gollnick, Mark P Foster 2012
Nitric oxide synthases and atrial fibrillation Ingrid M Bonilla, Arun Sridhar, Sandor Györke, Arturo J Cardounel, Cynthia A Carnes 2012
Oxidatively modified low density lipoprotein (LDL) inhibits TLR2 and TLR4 cytokine responses in human monocytes but not in macrophages Yashaswini Kannan, Kruthika Sundaram, Chandrakala Aluganti Narasimhulu, Sampath Parthasarathy, Mark D Wewers 2012
Oxygen cycling in conjunction with stem cell transplantation induces NOS3 expression leading to attenuation of fibrosis and improved cardiac function Mahmood Khan, Sarath Meduru, Rajan Gogna, Esha Madan, Lucas Citro, Muthulakshmi L Kuppusamy, Muzzammil Sayyid, Mahmoud Mostafa, Robert L Hamlin, Periannan Kuppusamy 2012
QSAR studies for prediction of cross-β sheet aggregate binding affinity and selectivity Katryna Cisek, Jeff Kuret 2012
RAD51 protein ATP cap regulates nucleoprotein filament stability Ravindra Amunugama, Yujiong He, Smaranda Willcox, Robert A Forties, Kang-Sup Shim, Ralf Bundschuh, Yu Luo, Jack Griffith, Richard Fishel 2012
Selectivity requirements for diagnostic imaging of neurofibrillary lesions in Alzheimer's disease: a simulation study Kelsey N Schafer, Sohee Kim, Anastasios Matzavinos, Jeff Kuret 2012
Shortened Ca2+ signaling refractoriness underlies cellular arrhythmogenesis in a postinfarction model of sudden cardiac death Andriy E Belevych, Dmitry Terentyev, Radmila Terentyeva, Hsiang-Ting Ho, Inna Gyorke, Ingrid M Bonilla, Cynthia A Carnes, George E Billman, Sandor Györke 2012
Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome Cai Chen, Ralf Bundschuh 2012
Ultrafast dynamics of nonequilibrium electron transfer in photoinduced redox cycle: solvent mediation and conformation flexibility Ya-Ting Kao, Xunmin Guo, Yi Yang, Zheyun Liu, Ali Hassanali, Qin-Hua Song, Lijuan Wang, Dongping Zhong 2012
A high-throughput and quantitative method to assess the mutagenic potential of translesion DNA synthesis David J Taggart, Terry L Camerlengo, Jason K Harrison, Shanen M Sherrer, Ajay K Kshetry, John-Stephen Taylor, Kun Huang, Zucai Suo 2013
Alkaloids from Microcos paniculata with cytotoxic and nicotinic receptor antagonistic activities Patrick C Still, Bitna Yi, Tatiana F González-Cestari, Li Pan, Ryan E Pavlovicz, Hee-Byung Chai, Tran Ngoc Ninh, Chenglong Li, Djaja Djendoel Soejarto, Dennis B McKay, A Douglas Kinghorn 2013
Conformational changes in the lower palm domain of ASIC1a contribute to desensitization and RFamide modulation Erin N Frey, Ryan E Pavlovicz, Clem John Wegman, Chenglong Li, Candice C Askwith 2013
Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion Sai Krishna C Korada, Trevor D Johns, Christopher E Smith, Nathan D Jones, Kimberly A McCabe, Charles E Bell 2013
Decreased RyR2 refractoriness determines myocardial synchronization of aberrant Ca2+ release in a genetic model of arrhythmia Lucia Brunello, Jessica L Slabaugh, Przemyslaw B Radwanski, Hsiang-Ting Ho, Andriy E Belevych, Qing Lou, Haiyan Chen, Carlo Napolitano, Francesco Lodola, Silvia G Priori, Vadim V Fedorov, Pompeo Volpe, Michael Fill, Paul M L Janssen, Sándor Györke 2013
Dietary omega-3 fatty acids promote arrhythmogenic remodeling of cellular Ca2+ handling in a postinfarction model of sudden cardiac death Andriy E Belevych, Hsiang-Ting Ho, Radmila Terentyeva, Ingrid M Bonilla, Dmitry Terentyev, Cynthia A Carnes, Sandor Gyorke, George E Billman 2013
Discoidin domain receptors: unique receptor tyrosine kinases in collagen-mediated signaling Hsueh-Liang Fu, Rajeshwari R Valiathan, Richard Arkwright , Anjum Sohail, Cosmin Mihai, Malika Kumarasiri, Kiran V Mahasenan, Shahriar Mobashery, Paul Huang, Gunjan Agarwal, Rafael Fridman 2013
Discovery of benzamide analogs as negative allosteric modulators of human neuronal nicotinic receptors: pharmacophore modeling and structure-activity relationship studies Bitna Yi, Sihui Long, Tatiana F González-Cestari, Brandon J Henderson, Ryan E Pavlovicz, Karl Werbovetz, Chenglong Li, Dennis B McKay 2013
Dynamic determination of the functional state in photolyase and the implication for cryptochrome Zheyun Liu, Meng Zhang, Xunmin Guo, Chuang Tan, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong 2013
EEG/MEG- and imaging-based diagnosis of Alzheimer's disease Sarah Hulbert, Hojjat Adeli 2013