Publications | Biophysics Graduate Program

Title	Investigators	Year
Dietary omega-3 fatty acids promote arrhythmogenic remodeling of cellular Ca2+ handling in a postinfarction model of sudden cardiac death	Andriy E Belevych, Hsiang-Ting Ho, Radmila Terentyeva, Ingrid M Bonilla, Dmitry Terentyev, Cynthia A Carnes, Sandor Gyorke, George E Billman	2013
Discoidin domain receptors: unique receptor tyrosine kinases in collagen-mediated signaling	Hsueh-Liang Fu, Rajeshwari R Valiathan, Richard Arkwright , Anjum Sohail, Cosmin Mihai, Malika Kumarasiri, Kiran V Mahasenan, Shahriar Mobashery, Paul Huang, Gunjan Agarwal, Rafael Fridman	2013
Discovery of benzamide analogs as negative allosteric modulators of human neuronal nicotinic receptors: pharmacophore modeling and structure-activity relationship studies	Bitna Yi, Sihui Long, Tatiana F González-Cestari, Brandon J Henderson, Ryan E Pavlovicz, Karl Werbovetz, Chenglong Li, Dennis B McKay	2013
Dynamic determination of the functional state in photolyase and the implication for cryptochrome	Zheyun Liu, Meng Zhang, Xunmin Guo, Chuang Tan, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong	2013
EEG/MEG- and imaging-based diagnosis of Alzheimer's disease	Sarah Hulbert, Hojjat Adeli	2013
Homotropic cooperativity from the activation pathway of the allosteric ligand-responsive regulatory trp RNA-binding attenuation protein	Ian R Kleckner, Craig A McElroy, Petr Kuzmic, Paul Gollnick, Mark P Foster	2013
Hyperoxemic reperfusion after prolonged cardiac arrest in a rat cardiopulmonary bypass resuscitation model	Steve T Yeh, Sverre E Aune, Traci A Wilgus, Allison E Parent, Mark G Angelos	2013
Neuronal nitric oxide synthase is indispensable for the cardiac adaptive effects of exercise	Steve R Roof, Lifei Tang, Joseph E Ostler, Muthu Periasamy, Sandor Györke, George E Billman, Mark T Ziolo	2013
Oligomerization of DDR1 ECD affects receptor-ligand binding	David Yeung, David Chmielewski, Cosmin Mihai, Gunjan Agarwal	2013
Preoperative MRI underestimates articular cartilage defect size compared with findings at arthroscopic knee surgery	Andrew B Campbell, Michael V Knopp, Gregory P Kolovich, Wendo Wei, Guang Jia, Robert A Siston, David C Flanigan	2013
Pulmonary hypertension secondary to left-heart failure involves peroxynitrite-induced downregulation of PTEN in the lung	Yazhini Ravi, Karuppaiyah Selvendiran, Shan K Naidu, Sarath Meduru, Lucas A Citro, Balázs Bognár, Mahmood Khan, Tamás Kálai, Kálmán Hideg, Periannan Kuppusamy, Chittoor B Sai-Sudhakar	2013
Sequence-dependent thymine dimer formation and photoreversal rates in double-stranded DNA	Yu Kay Law, Robert A Forties, Xin Liu, Michael G Poirier, Bern Kohler	2013
Single-molecule investigation of substrate binding kinetics and protein conformational dynamics of a B-family replicative DNA polymerase	Brian A Maxwell, Zucai Suo	2013
Sivelestat attenuates myocardial reperfusion injury during brief low flow postischemic infusion	Sverre E Aune, Steve T Yeh, Periannan Kuppusamy, M Lakshmi Kuppusamy, Mahmood Khan, Mark G Angelos	2013
Structural determinants of Tau aggregation inhibitor potency	Kelsey N Schafer, Katryna Cisek, Carol J Huseby, Edward Chang, Jeff Kuret	2013
The positive inotropic effect of pyruvate involves an increase in myofilament calcium sensitivity	Carlos A A Torres, Kenneth D Varian, Cynthia H Canan, Jonathan P Davis, Paul M L Janssen	2013
ZIP8 regulates host defense through zinc-mediated inhibition of NF-κB	Ming-Jie Liu, Shengying Bao, Marina Gálvez-Peralta, Charlie J Pyle, Andrew C Rudawsky, Ryan E Pavlovicz, David W Killilea, Chenglong Li, Daniel W Nebert, Mark D Wewers, Daren L Knoell	2013
Cardiac troponin I tyrosine 26 phosphorylation decreases myofilament Ca2+ sensitivity and accelerates deactivation	Hussam E Salhi, Shane D Walton, Nathan C Hassel, Elizabeth A Brundage, Pieter P de Tombe, Paul M L Janssen, Jonathan P Davis, Brandon J Biesiadecki	2014
Chemical exchange saturation transfer MR imaging of articular cartilage glycosaminoglycans at 3 T: Accuracy of B0 Field Inhomogeneity corrections with gradient echo method	Wenbo Wei, Guang Jia, David Flanigan, Jinyuan Zhou, Michael V Knopp	2014
Combined troponin I Ser-150 and Ser-23/24 phosphorylation sustains thin filament Ca(2+) sensitivity and accelerates deactivation in an acidic environment	Benjamin R Nixon, Shane D Walton, Bo Zhang, Elizabeth A Brundage, Sean C Little, Mark T Ziolo, Jonathan P Davis, Brandon J Biesiadecki	2014
Conformational dynamics of a Y-family DNA polymerase during substrate binding and catalysis as revealed by interdomain Förster resonance energy transfer	Brian A Maxwell, Cuiling Xu, Zucai Suo	2014
Conformational dynamics of Thermus aquaticus DNA polymerase I during catalysis	Cuiling Xu, Brian A Maxwell, Zucai Suo	2014
Displacements, mean-squared displacements, and codisplacements for the calculation of nonequilibrium properties	Mithila V Agnihotri, Si-Han Chen, Corey Beck, Sherwin J Singer	2014
Drug design targeting protein-protein interactions (PPIs) using multiple ligand simultaneous docking (MLSD) and drug repositioning: discovery of raloxifene and bazedoxifene as novel inhibitors of IL-6/GP130 interface	Huameng Li, Hui Xiao, Li Lin, David Jou, Vandana Kumari, Jiayuh Lin, Chenglong Li	2014
Dynamic conformational change regulates the protein-DNA recognition: an investigation on binding of a Y-family polymerase to its target DNA	Xiakun Chu, Fei Liu, Brian A Maxwell, Yong Wang, Zucai Suo, Haijun Wang, Wei Han, Jin Wang	2014