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Publications

236 results found
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Title Investigators Year
Accurately Predicting Disordered Regions of Proteins Using Rosetta ResidueDisorder Application Stephanie S Kim, Justin T Seffernick, Steffen Lindert 2018
Driving Protein Conformational Changes with Light: Photoinduced Structural Rearrangement in a Heterobimetallic Oxidase Pearson T Maugeri, Julia J Griese, Rui M Branca, Effie K Miller, Zachary R Smith, Jürgen Eirich, Martin Högbom, Hannah S Shafaat 2018
Regional Deformation of the Optic Nerve Head and Peripapillary Sclera During IOP Elevation Elias Pavlatos, Yanhui Ma, Keyton Clayson, Xueliang Pan, Jun Liu 2018
Sub-cellular In-situ Characterization of Ferritin(iron) in a Rodent Model of Spinal Cord Injury A R Blissett, B Deng, P Wei, K J Walsh, B Ollander, J Sifford, A D Sauerbeck, D W McComb, D M McTigue, G Agarwal 2018
The psychoactive substance of cannabis Δ9-tetrahydrocannabinol (THC) negatively regulates CFTR in airway cells Sheng-Wei Chang, Jack Wellmerling, Xiaoli Zhang, Rachael E Rayner, Wissam Osman, Sara Mertz, Amal O Amer, Mark E Peeples, Prosper N Boyaka, Estelle Cormet-Boyaka 2018
AR-13 reduces antibiotic-resistant bacterial burden in cystic fibrosis phagocytes and improves cystic fibrosis transmembrane conductance regulator function Kaivon Assani, Chandra L Shrestha, Hannah Rinehardt, Shuzhong Zhang, Frank Robledo-Avila, Jack Wellmerling, Santiago Partida-Sanchez, Estelle Cormet-Boyaka, Susan D Reynolds, Larry S Schlesinger, Benjamin T Kopp 2019
Clustering, Spatial Distribution, and Phosphorylation of Discoidin Domain Receptors 1 and 2 in Response to Soluble Collagen I David A Yeung, Nirvan Shanker, Anjum Sohail, Brent A Weiss, Carolyn Wang, Jack Wellmerling, Subhadip Das, Ramesh K Ganju, Jeanette L C Miller, Andrew B Herr, Rafael Fridman, Gunjan Agarwal 2019
Compact quantum dot surface modification to enable emergent behaviors in quantum dot-DNA composites Abhilasha Dehankar, Thomas Porter, Joshua A Johnson, Carlos E Castro, Jessica O Winter 2019
Dissociation rate compensation mechanism for budding yeast pioneer transcription factors Benjamin T Donovan, Hengye Chen, Caroline Jipa, Lu Bai, Michael G Poirier 2019
DNA sequence influences hexasome orientation to regulate DNA accessibility Matthew Brehove, Elan Shatoff, Benjamin T Donovan, Caroline M Jipa, Ralf Bundschuh, Michael G Poirier 2019
Extreme Nonuniform Sampling for Protein NMR Dynamics Studies in Minimal Time Gregory Jameson, Alexander L Hansen, Dawei Li, Lei Bruschweiler-Li, Rafael Bruschweiler 2019
Improving inverse docking target identification with Z-score selection Stephanie S Kim, Melanie L Aprahamian, Steffen Lindert 2019
Indirect magnetic force microscopy Joshua Sifford, Kevin J Walsh, Sheng Tong, Gang Bao, Gunjan Agarwal 2019
Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting Benjamin T Donovan, Anh Huynh, David A Ball, Heta P Patel, Michael G Poirier, Daniel R Larson, Matthew L Ferguson, Tineke L Lenstra 2019
Measuring Intrinsic Disorder and Tracking Conformational Transitions Using Rosetta ResidueDisorder Justin T Seffernick, He Ren, Stephanie S Kim, Steffen Lindert 2019
Mechanical Deformation of Human Optic Nerve Head and Peripapillary Tissue in Response to Acute IOP Elevation Yanhui Ma, Elias Pavlatos, Keyton Clayson, Xueliang Pan, Sunny Kwok, Thomas Sandwisch, Jun Liu 2019
Quantification of Tau Protein Lysine Methylation in Aging and Alzheimer's Disease Carol J Huseby, Claire N Hoffman, Grace L Cooper, Jean-Christophe Cocuron, Ana P Alonso, Stefani N Thomas, Austin J Yang, Jeff Kuret 2019
Quantitative Modeling of Nucleosome Unwrapping from Both Ends Dengke Zhao, Jenny V Le, Michael A Darcy, Kyle Crocker, Michael G Poirier, Carlos Castro, Ralf Bundschuh 2019
Reduced expression of the Ion channel CFTR contributes to airspace enlargement as a consequence of aging and in response to cigarette smoke in mice Jack H Wellmerling, Sheng-Wei Chang, Eunsoo Kim, Wissam H Osman, Prosper N Boyaka, Michael T Borchers, Estelle Cormet-Boyaka 2019
RiboProP: a probabilistic ribosome positioning algorithm for ribosome profiling Dengke Zhao, William D Baez, Kurt Fredrick, Ralf Bundschuh 2019
SMaSH: Sample matching using SNPs in humans Maximillian Westphal, David Frankhouser, Carmine Sonzone, Peter G Shields, Pearlly Yan, Ralf Bundschuh 2019
The role of annealing and fragmentation in human tau aggregation dynamics Carol J Huseby, Ralf Bundschuh, Jeff Kuret 2019
Uncertainty quantification of a DNA origami mechanism using a coarse-grained model and kinematic variance analysis Chao-Min Huang, Anjelica Kucinic, Jenny V Le, Carlos E Castro, Hai-Jun Su 2019
Collagen fibril abnormalities in human and mice abdominal aortic aneurysm Blain Jones, Jeffrey R Tonniges, Anna Debski, Benjamin Albert, David A Yeung, Nikhit Gadde, Advitiya Mahajan, Neekun Sharma, Edward P Calomeni, Michael R Go, Chetan P Hans, Gunjan Agarwal 2020
Conditional Up-Regulation of SERCA2a Exacerbates RyR2-Dependent Ventricular and Atrial Arrhythmias Bin Liu, Qing Lou, Heather Smith, Florencia Velez-Cortes, Wolfgang H Dillmann, Björn C Knollmann, Antonis A Armoundas, Sándor Györke 2020