Publications (co-)authored by Ralf Bundschuh with students in the Biophysics program

[1] 

Ahmed A Zayed, James M Wainaina, Guillermo Dominguez-Huerta, Eric Pelletier, Jiarong Guo, Mohamed Mohssen, Funing Tian, Akbar Adjie Pratama, Benjamin Bolduc, Olivier Zablocki, Dylan Cronin, Lindsey Solden, Erwan Delage, Adriana Alberti, Jean-Marc Aury, Quentin Carradec, Corinne da Silva, Karine Labadie, Julie Poulain, Hans-Joachim Ruscheweyh, Guillem Salazar, Elan Shatoff, , Ralf Bundschuh, Kurt Fredrick, Laura S Kubatko, Samuel Chaffron, Alexander I Culley, Shinichi Sunagawa, Jens H Kuhn, Patrick Wincker, Matthew B Sullivan, Silvia G Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Lionel Guidi, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Lee Karp-Boss, Eric Karsenti, Fabrice Not, Hiroyuki Ogata, Nicole Poulton, St├ęphane Pesant, Christian Sardet, Sabrinia Speich, Lars Stemmann, Matthew B Sullivan, Shinichi Sungawa, and Patrick Wincker
"Cryptic and abundant marine viruses at the evolutionary origins of Earths RNA virome."
Science 376, 156-162 (2022).

[2] 

Maximillian Westphal, David Frankhouser, Carmine Sonzone, Peter G Shields, Pearlly Yan, and Ralf Bundschuh
"SMaSH: Sample matching using SNPs in humans."
BMC Genomics 20, 1001 (2019).

[3] 

Dengke Zhao, Jenny V Le, Michael A Darcy, Kyle Crocker, Michael G Poirier, Carlos Castro, and Ralf Bundschuh
"Quantitative Modeling of Nucleosome Unwrapping from Both Ends."
Biophys. J. 117, S0006-34951930880-X (2019).

[4] 

Matthew Brehove, Elan Shatoff, Benjamin T Donovan, Caroline M Jipa, Ralf Bundschuh, and Michael G Poirier
"DNA sequence influences hexasome orientation to regulate DNA accessibility."
Nucleic Acids Res. 47, 5617-5633 (2019).

[5] 

Dengke Zhao, William D Baez, Kurt Fredrick, and Ralf Bundschuh
"RiboProP: a probabilistic ribosome positioning algorithm for ribosome profiling."
Bioinformatics 35, 1486-1493 (2019).

[6] 

Carol J Huseby, Ralf Bundschuh, and Jeff Kuret
"The role of annealing and fragmentation in human tau aggregation dynamics."
J. Biol. Chem. 294, 4728-4737 (2019).

[7] 

Cai Chen and Ralf Bundschuh
"Quantitative models for accelerated protein dissociation from nucleosomal DNA."
Nucleic Acids Res. 42, 9753-60 (2014).

[8] 

Karl W Kroll, Nima E Mokaram, Alexander R Pelletier, David E Frankhouser, Maximillian S Westphal, Paige A Stump, Cameron L Stump, Ralf Bundschuh, James S Blachly, and Pearlly Yan
"Quality Control for RNA-Seq QuaCRS: An Integrated Quality Control Pipeline."
Cancer Inform 13, 7-14 (2014).

[9] 

Ravindra Amunugama, Yujiong He, Smaranda Willcox, Robert A Forties, Kang-Sup Shim, Ralf Bundschuh, Yu Luo, Jack Griffith, and Richard Fishel
"RAD51 protein ATP cap regulates nucleoprotein filament stability."
J. Biol. Chem. 287, 8724-36 (2012).

[10] 

Cai Chen, David Frankhouser, and Ralf Bundschuh
"Comparison of insertional RNA editing in Myxomycetes."
PLoS Comput. Biol. 8, e1002400 (2012).

[11] 

Cai Chen and Ralf Bundschuh
"Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome."
BMC Genomics 13, 616 (2012).

[12] 

Marianne M Lee, Michael K Chan, and Ralf Bundschuh
"Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches."
Bioinformatics 24, 1339-43 (2008).

[13] 

Marianne M Lee, Ralf Bundschuh, and Michael K Chan
"Distant homology detection using a LEngth and STructure-based sequence Alignment Tool LESTAT."
Proteins 71, 1409-19 (2008).

© 2018, The Ohio State University Site Administrator Login